CmaCh13G010290 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh13G010290
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Aspartyl protease APCB1 isoform X2
Location	Cma_Chr13: 7880078 .. 7882589 (-)
RNA-Seq Expression	CmaCh13G010290
Synteny	CmaCh13G010290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGATGAAGAACAGTTTATGTTATAGACGAAGCTAATTCTTCCTTTTCTTCTTTGTTACCTTCATGCTTACAACAAATTTCAGCTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAATTTCTCTAGAGAAAAAGAGATAAAAAGAGAGAGATTTCACCTTTTATACTGAGAAGAGCTCTTCTTACTTTCCTGTAACATCCATTACAGTCCATGTGAATCCTCAAAACCATCCAGAAAAACTGCCATAGTTGTCAAGGGAAAACAGTTCAATATTGCCAATGAAGAAGAAGAATGGAAAAAGTTGGGTAAGATTGAACTTGCCTTTCCAGTCATTAAATCACTGACAAAAAAAAAAAAACAGAACCTTTCTCCAGGAATCTAAACCCCTATGATGCTTAAACACAGAGGCAGAGAGAAAAACTGATGGGTTTCTCCCAAAACTTGAAAGGGATGGACTTCAAAATCTGGGTTTAACGATGGTATTGATTGGCGAGAGAATATCAAAACATTGAATAATAACAACAATATTATTGGTATTAATATTTGGAACCTGATTCCGCATTGTGGTGCGTTGGTTGTTCGTTATTCTTGGCTTTTTTAGCTTTGCTTCTCCCTTCATGTTTTTTCTATGGAGAAAAAGAAGGTATCCTTCCTTTAGCCAGAAAGCCATTATTCTTTTCCACACCATAAGTCTATGCTTCTCCTTCAAAAATACATTAAAGGTAGCAAGCCATGGCAGCAACCATTTAGAAAACATCCGTCTTTTGCTTTATATGAAGGAATATTCCAAATCTTTAGAGTTGTGTAATCGAACTTCCTTTGGTAAGTGTTCTAACTTATCCCAAGTTAAGGCAGCATAATCTTATAAACCTTTGTCCATCCGAGCATAGCGAATGTCTCAAGGCACCAATTATCTTTCTAAAGATCAATTGTTTGATCCTTCATCAAGCGATAACTGAACTAACACAAATTCAAACCTTGACAAAGCCAAATTTAACAAACGTAGACAAAGTAGAAAGCTCAAACAAATGTCAAAGTCTTGTTTTCCTTAGCATCAAACCCTGTTGTTAAGATTCTGAATGTATTTTATTCTTCCTTGCACTAAACTTGAAGATGATGCGACTTTAAGAATCATTTTCAATGTGCGAAGATTAGACACAAATTCGAGAGAGGAAGAAATTATGGAAAGAATTACAAATTTCATTATAATTTCATTATTATTTTGGGTTGAAATGACTGGAAATAAAAGTGGGATTTACATCATTTCTTCCAAGGGTAGGCTAACTGATAGGAATTGATAGAACCACGCAATAAGAAAATCCCACCGTCTTGAGCAGACCAAACACAGTTATGATCATTACATTCATCGCTAAGCCGGCTTCCTTCTTCCGGCCAGAAAACATCACCAGTAACCTGTCCATATTTGCTGCTAAAATGGCACCAAAACTGTGTGGTTTGCCAAATATTTTCTTTGAACTTCAAGAAGTAGTTATCCCCTTGCTTGATCTCATGCCTGCCCAAATCGTTGTCCTTTGATTTGCAGTGAACCATCAAAGTTGAATCGATCATATGATTATAAATGGTCACTTGCCATCGAGAAAATGGAAGCTGTACCTTGGATTCTGTAGGTTGTGCAAAGCATGGCTTCATAAGCATGTTTGATCCCAAACCCAGCAATAAAATGAAACATAATGGGTTTACAGACTCCATTTTCTATGGAGTTTGGTCACTTTCTTTTTCCCTTTTTGACAAAACCCTTGTTTGTTTTGTTTTATATATACCCAAATTGAGTTGCTATAATGGCATGTTTCTCCTTAATTTTCTCACCTATTTAGACCACTCCTTAGCTGCTCTCTCTTTTAGTAACGGATTTTGTATTTTATTGGTTACTTTCATTTCTACGTTCAACTATTTATGATTATTAATTACCCATGTTAAGTTTAAATAAATGTCCACCATTCATTATTTACGTGCAACAAAATTAGCTAAAATATTAAGAATTTATTTTTGTAACCTATGCTTTTTATTTCAATAAAGATGAAAGAGAGGAATGTTTGACCTTACATTCATTATCACACCAGCTTATTCACGAATTGGTCCATCCTACCATGAAATATTATGTTTGTTACTTTATTTTATGCAGGATCTGGGAAGGTTATTTTGATATTGCTCTATTTATTGATTGAAATTTCAAAATTGTAAAGGACTATGAATGAAACAATAAGAACAGACATTCCCAAA

mRNA sequence

ATGAAAGATGAAGAACACTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAATTTCTCTAGAGAAAAAGAGATAAAAAGAGAGAGATTTCACCTTTTATACTGAGAAGAGCTCTTCTTACTTTCCTGTAACATCCATTACAGTCCATGTGAATCCTCAAAACCATCCAGAAAAACTGCCATAGTTGTCAAGGGAAAACAGTTCAATATTGCCAATGAAGAAGAAGAATGGAAAAAGTTGGGTAAGATTGAACTTGCCTTTCCAGTCATTAAATCACTGACAAAAAAAAAAAAACAGAACCTTTCTCCAGGAATCTAAACCCCTATGATGCTTAAACACAGAGGCAGAGAGAAAAACTGATGGGTTTCTCCCAAAACTTGAAAGGGATGGACTTCAAAATCTGGGTTTAACGATGGTATTGATTGGCGAGAGAATATCAAAACATTGAATAATAACAACAATATTATTGGTATTAATATTTGGAACCTGATTCCGCATTGTGGTGCGTTGGTTGTTCGTTATTCTTGGCTTTTTTAGCTTTGCTTCTCCCTTCATGTTTTTTCTATGGAGAAAAAGAAGGTATCCTTCCTTTAGCCAGAAAGCCATTATTCTTTTCCACACCATAAGTCTATGCTTCTCCTTCAAAAATACATTAAAGGTAGCAAGCCATGGCAGCAACCATTTAGAAAACATCCGTCTTTTGCTTTATATGAAGGAATATTCCAAATCTTTAGAGTTGTGTAATCGAACTTCCTTTGGTAAGTGTTCTAACTTATCCCAAGTTAAGGCAGCATAATCTTATAAACCTTTGTCCATCCGAGCATAGCGAATGTCTCAAGGCACCAATTATCTTTCTAAAGATCAATTGTTTGATCCTTCATCAAGCGATAACTGAACTAACACAAATTCAAACCTTGACAAAGCCAAATTTAACAAACGTAGACAAAGTAGAAAGCTCAAACAAATGTCAAAGTCTTGTTTTCCTTAGCATCAAACCCTGTTGTTAAGATTCTGAATGTATTTTATTCTTCCTTGCACTAAACTTGAAGATGATGCGACTTTAAGAATCATTTTCAATGTGCGAAGATTAGACACAAATTCGAGAGAGGAAGAAATTATGGAAAGAATTACAAATTTCATTATAATTTCATTATTATTTTGGGTTGAAATGACTGGAAATAAAAGTGGGATTTACATCATTTCTTCCAAGGGTAGGCTAACTGATAGGAATTGATAGAACCACGCAATAAGAAAATCCCACCGTCTTGAGCAGACCAAACACAGTTATGATCATTACATTCATCGCTAAGCCGGCTTCCTTCTTCCGGCCAGAAAACATCACCAGTAACCTGTCCATATTTGCTGCTAAAATGGCACCAAAACTGTGTGGTTTGCCAAATATTTTCTTTGAACTTCAAGAAGTAGTTATCCCCTTGCTTGATCTCATGCCTGCCCAAATCGTTGTCCTTTGATTTGCAGTGAACCATCAAAGTTGAATCGATCATATGATTATAAATGGTCACTTGCCATCGAGAAAATGGAAGCTGTACCTTGGATTCTGTAGGTTGTGCAAAGCATGGCTTCATAAGCATGTTTGATCCCAAACCCAGCAATAAAATGAAACATAATGGGTTTACAGACTCCATTTTCTATGGAGTTTGGTCACTTTCTTTTTCCCTTTTTGACAAAACCCTTGTTTGTTTTGTTTTATATATACCCAAATTGAGTTGCTATAATGGCATGTTTCTCCTTAATTTTCTCACCTATTTAGACCACTCCTTAGCTGCTCTCTCTTTTAGTAACGGATTTTGTATTTTATTGGTTACTTTCATTTCTACGTTCAACTATTTATGATTATTAATTACCCATGTTAAGTTTAAATAAATGTCCACCATTCATTATTTACGTGCAACAAAATTAGCTAAAATATTAAGAATTTATTTTTGTAACCTATGCTTTTTATTTCAATAAAGATGAAAGAGAGGAATGTTTGACCTTACATTCATTATCACACCAGCTTATTCACGAATTGGTCCATCCTACCATGAAATATTATGTTTGTTACTTTATTTTATGCAGGATCTGGGAAGGTTATTTTGATATTGCTCTATTTATTGATTGAAATTTCAAAATTGTAAAGGACTATGAATGAAACAATAAGAACAGACATTCCCAAA

Coding sequence (CDS)

ATGAAAGATGAAGAACACTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAA

Protein sequence

MKDEEHLVIVGLAFPGIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVLQLYQEDKDLHVISYRIESIEERQRENSQPY

Homology

[Close]

BLAST of CmaCh13G010290 vs. ExPASy TrEMBL
Match: A0A5D3BIS5 (Aspartyl protease APCB1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001890 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 16  GIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVL 75
           GIDD+G LDIIVF EGITLLNLQYLYSAVG LPYFDCYILRAKL TNAYPA+LLFYQM L
Sbjct: 534 GIDDQGPLDIIVFIEGITLLNLQYLYSAVGFLPYFDCYILRAKLPTNAYPAMLLFYQMGL 593

Query: 76  QLYQED 82
           QLYQ+D
Sbjct: 594 QLYQDD 599

[Close]

BLAST of CmaCh13G010290 vs. NCBI nr
Match: TYJ98986.1 (aspartyl protease APCB1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-23
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 16  GIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVL 75
           GIDD+G LDIIVF EGITLLNLQYLYSAVG LPYFDCYILRAKL TNAYPA+LLFYQM L
Sbjct: 534 GIDDQGPLDIIVFIEGITLLNLQYLYSAVGFLPYFDCYILRAKLPTNAYPAMLLFYQMGL 593

Query: 76  QLYQED 82
           QLYQ+D
Sbjct: 594 QLYQDD 599

The following BLAST results are available for this feature:

BLAST of CmaCh13G010290 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh13G010290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BIS5	4.5e-23	87.88	Aspartyl protease APCB1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of CmaCh13G010290 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98986.1	9.3e-23	87.88	aspartyl protease APCB1 isoform X2 [Cucumis melo var. makuwa]	[more]

BLAST of CmaCh13G010290 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G010290.1	CmaCh13G010290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity