CmaCh13G010290.1 (mRNA) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh13G010290.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionAspartyl protease APCB1 isoform X2
LocationCma_Chr13: 7880078 .. 7882589 (-)
Sequence length2442
RNA-Seq ExpressionCmaCh13G010290.1
SyntenyCmaCh13G010290.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGATGAAGAACAGTTTATGTTATAGACGAAGCTAATTCTTCCTTTTCTTCTTTGTTACCTTCATGCTTACAACAAATTTCAGCTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAATTTCTCTAGAGAAAAAGAGATAAAAAGAGAGAGATTTCACCTTTTATACTGAGAAGAGCTCTTCTTACTTTCCTGTAACATCCATTACAGTCCATGTGAATCCTCAAAACCATCCAGAAAAACTGCCATAGTTGTCAAGGGAAAACAGTTCAATATTGCCAATGAAGAAGAAGAATGGAAAAAGTTGGGTAAGATTGAACTTGCCTTTCCAGTCATTAAATCACTGACAAAAAAAAAAAAACAGAACCTTTCTCCAGGAATCTAAACCCCTATGATGCTTAAACACAGAGGCAGAGAGAAAAACTGATGGGTTTCTCCCAAAACTTGAAAGGGATGGACTTCAAAATCTGGGTTTAACGATGGTATTGATTGGCGAGAGAATATCAAAACATTGAATAATAACAACAATATTATTGGTATTAATATTTGGAACCTGATTCCGCATTGTGGTGCGTTGGTTGTTCGTTATTCTTGGCTTTTTTAGCTTTGCTTCTCCCTTCATGTTTTTTCTATGGAGAAAAAGAAGGTATCCTTCCTTTAGCCAGAAAGCCATTATTCTTTTCCACACCATAAGTCTATGCTTCTCCTTCAAAAATACATTAAAGGTAGCAAGCCATGGCAGCAACCATTTAGAAAACATCCGTCTTTTGCTTTATATGAAGGAATATTCCAAATCTTTAGAGTTGTGTAATCGAACTTCCTTTGGTAAGTGTTCTAACTTATCCCAAGTTAAGGCAGCATAATCTTATAAACCTTTGTCCATCCGAGCATAGCGAATGTCTCAAGGCACCAATTATCTTTCTAAAGATCAATTGTTTGATCCTTCATCAAGCGATAACTGAACTAACACAAATTCAAACCTTGACAAAGCCAAATTTAACAAACGTAGACAAAGTAGAAAGCTCAAACAAATGTCAAAGTCTTGTTTTCCTTAGCATCAAACCCTGTTGTTAAGATTCTGAATGTATTTTATTCTTCCTTGCACTAAACTTGAAGATGATGCGACTTTAAGAATCATTTTCAATGTGCGAAGATTAGACACAAATTCGAGAGAGGAAGAAATTATGGAAAGAATTACAAATTTCATTATAATTTCATTATTATTTTGGGTTGAAATGACTGGAAATAAAAGTGGGATTTACATCATTTCTTCCAAGGGTAGGCTAACTGATAGGAATTGATAGAACCACGCAATAAGAAAATCCCACCGTCTTGAGCAGACCAAACACAGTTATGATCATTACATTCATCGCTAAGCCGGCTTCCTTCTTCCGGCCAGAAAACATCACCAGTAACCTGTCCATATTTGCTGCTAAAATGGCACCAAAACTGTGTGGTTTGCCAAATATTTTCTTTGAACTTCAAGAAGTAGTTATCCCCTTGCTTGATCTCATGCCTGCCCAAATCGTTGTCCTTTGATTTGCAGTGAACCATCAAAGTTGAATCGATCATATGATTATAAATGGTCACTTGCCATCGAGAAAATGGAAGCTGTACCTTGGATTCTGTAGGTTGTGCAAAGCATGGCTTCATAAGCATGTTTGATCCCAAACCCAGCAATAAAATGAAACATAATGGGTTTACAGACTCCATTTTCTATGGAGTTTGGTCACTTTCTTTTTCCCTTTTTGACAAAACCCTTGTTTGTTTTGTTTTATATATACCCAAATTGAGTTGCTATAATGGCATGTTTCTCCTTAATTTTCTCACCTATTTAGACCACTCCTTAGCTGCTCTCTCTTTTAGTAACGGATTTTGTATTTTATTGGTTACTTTCATTTCTACGTTCAACTATTTATGATTATTAATTACCCATGTTAAGTTTAAATAAATGTCCACCATTCATTATTTACGTGCAACAAAATTAGCTAAAATATTAAGAATTTATTTTTGTAACCTATGCTTTTTATTTCAATAAAGATGAAAGAGAGGAATGTTTGACCTTACATTCATTATCACACCAGCTTATTCACGAATTGGTCCATCCTACCATGAAATATTATGTTTGTTACTTTATTTTATGCAGGATCTGGGAAGGTTATTTTGATATTGCTCTATTTATTGATTGAAATTTCAAAATTGTAAAGGACTATGAATGAAACAATAAGAACAGACATTCCCAAA

mRNA sequence

ATGAAAGATGAAGAACACTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAATTTCTCTAGAGAAAAAGAGATAAAAAGAGAGAGATTTCACCTTTTATACTGAGAAGAGCTCTTCTTACTTTCCTGTAACATCCATTACAGTCCATGTGAATCCTCAAAACCATCCAGAAAAACTGCCATAGTTGTCAAGGGAAAACAGTTCAATATTGCCAATGAAGAAGAAGAATGGAAAAAGTTGGGTAAGATTGAACTTGCCTTTCCAGTCATTAAATCACTGACAAAAAAAAAAAAACAGAACCTTTCTCCAGGAATCTAAACCCCTATGATGCTTAAACACAGAGGCAGAGAGAAAAACTGATGGGTTTCTCCCAAAACTTGAAAGGGATGGACTTCAAAATCTGGGTTTAACGATGGTATTGATTGGCGAGAGAATATCAAAACATTGAATAATAACAACAATATTATTGGTATTAATATTTGGAACCTGATTCCGCATTGTGGTGCGTTGGTTGTTCGTTATTCTTGGCTTTTTTAGCTTTGCTTCTCCCTTCATGTTTTTTCTATGGAGAAAAAGAAGGTATCCTTCCTTTAGCCAGAAAGCCATTATTCTTTTCCACACCATAAGTCTATGCTTCTCCTTCAAAAATACATTAAAGGTAGCAAGCCATGGCAGCAACCATTTAGAAAACATCCGTCTTTTGCTTTATATGAAGGAATATTCCAAATCTTTAGAGTTGTGTAATCGAACTTCCTTTGGTAAGTGTTCTAACTTATCCCAAGTTAAGGCAGCATAATCTTATAAACCTTTGTCCATCCGAGCATAGCGAATGTCTCAAGGCACCAATTATCTTTCTAAAGATCAATTGTTTGATCCTTCATCAAGCGATAACTGAACTAACACAAATTCAAACCTTGACAAAGCCAAATTTAACAAACGTAGACAAAGTAGAAAGCTCAAACAAATGTCAAAGTCTTGTTTTCCTTAGCATCAAACCCTGTTGTTAAGATTCTGAATGTATTTTATTCTTCCTTGCACTAAACTTGAAGATGATGCGACTTTAAGAATCATTTTCAATGTGCGAAGATTAGACACAAATTCGAGAGAGGAAGAAATTATGGAAAGAATTACAAATTTCATTATAATTTCATTATTATTTTGGGTTGAAATGACTGGAAATAAAAGTGGGATTTACATCATTTCTTCCAAGGGTAGGCTAACTGATAGGAATTGATAGAACCACGCAATAAGAAAATCCCACCGTCTTGAGCAGACCAAACACAGTTATGATCATTACATTCATCGCTAAGCCGGCTTCCTTCTTCCGGCCAGAAAACATCACCAGTAACCTGTCCATATTTGCTGCTAAAATGGCACCAAAACTGTGTGGTTTGCCAAATATTTTCTTTGAACTTCAAGAAGTAGTTATCCCCTTGCTTGATCTCATGCCTGCCCAAATCGTTGTCCTTTGATTTGCAGTGAACCATCAAAGTTGAATCGATCATATGATTATAAATGGTCACTTGCCATCGAGAAAATGGAAGCTGTACCTTGGATTCTGTAGGTTGTGCAAAGCATGGCTTCATAAGCATGTTTGATCCCAAACCCAGCAATAAAATGAAACATAATGGGTTTACAGACTCCATTTTCTATGGAGTTTGGTCACTTTCTTTTTCCCTTTTTGACAAAACCCTTGTTTGTTTTGTTTTATATATACCCAAATTGAGTTGCTATAATGGCATGTTTCTCCTTAATTTTCTCACCTATTTAGACCACTCCTTAGCTGCTCTCTCTTTTAGTAACGGATTTTGTATTTTATTGGTTACTTTCATTTCTACGTTCAACTATTTATGATTATTAATTACCCATGTTAAGTTTAAATAAATGTCCACCATTCATTATTTACGTGCAACAAAATTAGCTAAAATATTAAGAATTTATTTTTGTAACCTATGCTTTTTATTTCAATAAAGATGAAAGAGAGGAATGTTTGACCTTACATTCATTATCACACCAGCTTATTCACGAATTGGTCCATCCTACCATGAAATATTATGTTTGTTACTTTATTTTATGCAGGATCTGGGAAGGTTATTTTGATATTGCTCTATTTATTGATTGAAATTTCAAAATTGTAAAGGACTATGAATGAAACAATAAGAACAGACATTCCCAAA

Coding sequence (CDS)

ATGAAAGATGAAGAACACTTGGTCATAGTTGGATTGGCATTTCCAGGCATTGATGATGAAGGGTCCTTGGATATCATTGTTTTCAGTGAAGGTATCACACTCTTGAATCTCCAATATCTCTACTCTGCGGTTGGTCTTCTTCCTTATTTTGATTGCTATATCTTGAGGGCTAAACTTTCCACAAACGCTTACCCTGCACTGCTTTTGTTCTATCAAATGGTCCTCCAACTCTATCAAGAAGACAAGGATTTACATGTCATAAGTTACCGAATAGAATCCATTGAAGAGAGACAGAGAGAAAATAGTCAGCCATATTAA

Protein sequence

MKDEEHLVIVGLAFPGIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVLQLYQEDKDLHVISYRIESIEERQRENSQPY
Homology
[Close]
BLAST of CmaCh13G010290.1 vs. ExPASy TrEMBL
Match: A0A5D3BIS5 (Aspartyl protease APCB1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001890 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.5e-23
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 16  GIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVL 75
           GIDD+G LDIIVF EGITLLNLQYLYSAVG LPYFDCYILRAKL TNAYPA+LLFYQM L
Sbjct: 534 GIDDQGPLDIIVFIEGITLLNLQYLYSAVGFLPYFDCYILRAKLPTNAYPAMLLFYQMGL 593

Query: 76  QLYQED 82
           QLYQ+D
Sbjct: 594 QLYQDD 599

[Close]
BLAST of CmaCh13G010290.1 vs. NCBI nr
Match: TYJ98986.1 (aspartyl protease APCB1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 9.3e-23
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0 

Query: 16  GIDDEGSLDIIVFSEGITLLNLQYLYSAVGLLPYFDCYILRAKLSTNAYPALLLFYQMVL 75
           GIDD+G LDIIVF EGITLLNLQYLYSAVG LPYFDCYILRAKL TNAYPA+LLFYQM L
Sbjct: 534 GIDDQGPLDIIVFIEGITLLNLQYLYSAVGFLPYFDCYILRAKLPTNAYPAMLLFYQMGL 593

Query: 76  QLYQED 82
           QLYQ+D
Sbjct: 594 QLYQDD 599

The following BLAST results are available for this feature:
BLAST of CmaCh13G010290.1 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh13G010290.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BIS54.5e-2387.88Aspartyl protease APCB1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of CmaCh13G010290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYJ98986.19.3e-2387.88aspartyl protease APCB1 isoform X2 [Cucumis melo var. makuwa][more]
BLAST of CmaCh13G010290.1 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh13G010290CmaCh13G010290gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G010290.1:exon:4290CmaCh13G010290.1:exon:4290exon
CmaCh13G010290.1:exon:4289CmaCh13G010290.1:exon:4289exon


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G010290.1:three_prime_utrCmaCh13G010290.1:three_prime_utrthree_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G010290.1:cdsCmaCh13G010290.1:cds_2CDS
CmaCh13G010290.1:cdsCmaCh13G010290.1:cdsCDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh13G010290.1CmaCh13G010290.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity