Lag0017648.1 (mRNA) Sponge gourd (AG‐4) v1

Overview


Name	Lag0017648.1
Type	mRNA
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	ULP_PROTEASE domain-containing protein
Location	chr5: 6377704 .. 6378145 (+)
Sequence length	372
RNA-Seq Expression	Lag0017648.1
Synteny	Lag0017648.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGTAAATTATTATTATGTTTGTTGGAATTTTGTATATATATACTTAGCTTTGATGTTTTAAACTTTTGTAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

mRNA sequence

ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

Coding sequence (CDS)

ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

Protein sequence

MPEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKENSVTHKKSKGKDVREKPENLEGGTPYHLAIGSMDNIVKNIRVASTKCNHSWSSIRSRKCSSCGGHGHR

Homology

[Close]

BLAST of Lag0017648.1 vs. NCBI nr
Match: XP_008451868.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_008451869.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_016901189.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >KAA0040180.1 uncharacterized protein E6C27_scaffold118G00160 [Cucumis melo var. makuwa] >TYK16450.1 uncharacterized protein E5676_scaffold21G002480 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K           + +++A    Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314

Query: 62  NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
           N EN       SV+ KK+KGK V+                        ++PEN+  G P 
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374

[Close]

BLAST of Lag0017648.1 vs. NCBI nr
Match: XP_016901190.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K           + +++A    Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314

Query: 62  NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
           N EN       SV+ KK+KGK V+                        ++PEN+  G P 
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374

[Close]

BLAST of Lag0017648.1 vs. NCBI nr
Match: KAE8649224.1 (hypothetical protein Csa_014966 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q +  + +++     Q S  EN     
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 314

Query: 62  -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
                      SV  KK+K K V+                        ++PEN+  G P 
Sbjct: 315 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 374

[Close]

BLAST of Lag0017648.1 vs. NCBI nr
Match: XP_031740251.1 (uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0


Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q +  + +++     Q S  EN     
Sbjct: 259 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 318

Query: 62  -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
                      SV  KK+K K V+                        ++PEN+  G P 
Sbjct: 319 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 378

[Close]

BLAST of Lag0017648.1 vs. NCBI nr
Match: XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 46/116 (39.66%), Postives = 60/116 (51.72%), Query Frame = 0


Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKG----------------------- 61
           PEHRG +RGVG FV+ +++YNVAK   KL Q+ Q++                        
Sbjct: 255 PEHRGRIRGVGEFVSPALHYNVAKGKLKLIQESQNEAETQQSQDKDETQQSQDKDETRQS 314

Query: 62  -SSVKTEAPRRKQSSNKENSVTHKK-SKGKDVREKPENLEGGTPYHLAIGSMDNIV 93
            SSV  +  +RK+     N    KK  KGK V + PE +  G P HLAIGS+DNIV
Sbjct: 315 RSSVVEKKTKRKRVQKGRNVQKRKKVPKGKMVVKDPEEILEGIPCHLAIGSVDNIV 370

The following BLAST results are available for this feature:

BLAST of Lag0017648.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451868.1	3.4e-08	37.40	PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_016901190.1	3.4e-08	37.40	PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo]	[more]
KAE8649224.1	3.2e-06	34.35	hypothetical protein Csa_014966 [Cucumis sativus]	[more]
XP_031740251.1	3.2e-06	34.35	uncharacterized protein LOC101213947 [Cucumis sativus]	[more]
XP_038895921.1	4.1e-06	39.66	uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592...	[more]

BLAST of Lag0017648.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..83
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lag0017648	Lag0017648	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lag0017648.1.exon1	Lag0017648.1.exon1	exon
Lag0017648.1.exon2	Lag0017648.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Lag0017648.1	cds.Lag0017648.1	CDS
cds.Lag0017648.1	cds.Lag0017648.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lag0017648.1	Lag0017648.1-protein	polypeptide