Lag0017648 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0017648
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionULP_PROTEASE domain-containing protein
Locationchr5: 6377704 .. 6378145 (+)
RNA-Seq ExpressionLag0017648
SyntenyLag0017648
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGTAAATTATTATTATGTTTGTTGGAATTTTGTATATATATACTTAGCTTTGATGTTTTAAACTTTTGTAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

mRNA sequence

ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

Coding sequence (CDS)

ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA

Protein sequence

MPEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKENSVTHKKSKGKDVREKPENLEGGTPYHLAIGSMDNIVKNIRVASTKCNHSWSSIRSRKCSSCGGHGHR
Homology
BLAST of Lag0017648 vs. NCBI nr
Match: XP_008451868.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_008451869.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_016901189.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >KAA0040180.1 uncharacterized protein E6C27_scaffold118G00160 [Cucumis melo var. makuwa] >TYK16450.1 uncharacterized protein E5676_scaffold21G002480 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K           + +++A    Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314

Query: 62  NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
           N EN       SV+ KK+KGK V+                        ++PEN+  G P 
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374

BLAST of Lag0017648 vs. NCBI nr
Match: XP_016901190.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo])

HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0

Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K           + +++A    Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314

Query: 62  NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
           N EN       SV+ KK+KGK V+                        ++PEN+  G P 
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374

BLAST of Lag0017648 vs. NCBI nr
Match: KAE8649224.1 (hypothetical protein Csa_014966 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0

Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q +  + +++     Q S  EN     
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 314

Query: 62  -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
                      SV  KK+K K V+                        ++PEN+  G P 
Sbjct: 315 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 374

BLAST of Lag0017648 vs. NCBI nr
Match: XP_031740251.1 (uncharacterized protein LOC101213947 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0

Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
           PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q +  + +++     Q S  EN     
Sbjct: 259 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 318

Query: 62  -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
                      SV  KK+K K V+                        ++PEN+  G P 
Sbjct: 319 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 378

BLAST of Lag0017648 vs. NCBI nr
Match: XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 46/116 (39.66%), Postives = 60/116 (51.72%), Query Frame = 0

Query: 2   PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKG----------------------- 61
           PEHRG +RGVG FV+ +++YNVAK   KL Q+ Q++                        
Sbjct: 255 PEHRGRIRGVGEFVSPALHYNVAKGKLKLIQESQNEAETQQSQDKDETQQSQDKDETRQS 314

Query: 62  -SSVKTEAPRRKQSSNKENSVTHKK-SKGKDVREKPENLEGGTPYHLAIGSMDNIV 93
            SSV  +  +RK+     N    KK  KGK V + PE +  G P HLAIGS+DNIV
Sbjct: 315 RSSVVEKKTKRKRVQKGRNVQKRKKVPKGKMVVKDPEEILEGIPCHLAIGSVDNIV 370

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008451868.13.4e-0837.40PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_00... [more]
XP_016901190.13.4e-0837.40PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo][more]
KAE8649224.13.2e-0634.35hypothetical protein Csa_014966 [Cucumis sativus][more]
XP_031740251.13.2e-0634.35uncharacterized protein LOC101213947 [Cucumis sativus][more]
XP_038895921.14.1e-0639.66uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..83
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..76

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0017648.1Lag0017648.1mRNA