Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGTAAATTATTATTATGTTTGTTGGAATTTTGTATATATATACTTAGCTTTGATGTTTTAAACTTTTGTAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA
mRNA sequence
ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA
Coding sequence (CDS)
ATGCCAGAACACAGAGGGTGTGTAAGGGGAGTGGGTGTGTTCGTAACGCTCTCTGTGTACTACAATGTTGCTAAAGAGAATTCGAAGTTGAGTCAGAAACCACAAAGCAAAGGTTCGAGTGTCAAGACCGAAGCCCCTCGACGAAAGCAATCTTCGAACAAAGAAAATAGTGTCACACATAAAAAGTCAAAGGGAAAAGATGTACGTGAGAAACCTGAGAATTTGGAGGGTGGAACACCTTACCATCTAGCAATAGGCTCTATGGATAACATTGTTAAGAATATACGAGTCGCCTCCACAAAATGCAACCATTCATGGAGTTCCATTAGGAGTCGGAAATGTTCGAGTTGTGGTGGACATGGTCATAGGTGA
Protein sequence
MPEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKENSVTHKKSKGKDVREKPENLEGGTPYHLAIGSMDNIVKNIRVASTKCNHSWSSIRSRKCSSCGGHGHR
Homology
BLAST of Lag0017648.1 vs. NCBI nr
Match:
XP_008451868.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_008451869.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_016901189.1 PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >KAA0040180.1 uncharacterized protein E6C27_scaffold118G00160 [Cucumis melo var. makuwa] >TYK16450.1 uncharacterized protein E5676_scaffold21G002480 [Cucumis melo var. makuwa])
HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0
Query: 2 PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K + +++A Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314
Query: 62 NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
N EN SV+ KK+KGK V+ ++PEN+ G P
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374
BLAST of Lag0017648.1 vs. NCBI nr
Match:
XP_016901190.1 (PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo])
HSP 1 Score: 68.9 bits (167), Expect = 3.4e-08
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0
Query: 2 PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSK---------GSSVKTEAPRRKQSS 61
PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q K + +++A Q S
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDKDETQQSQDENETQQSKAENETQQS 314
Query: 62 NKEN-------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
N EN SV+ KK+KGK V+ ++PEN+ G P
Sbjct: 315 NDENETQQSRSSVSRKKTKGKKVQKGKKGPKGKMVVKESEETLEVQVLQEPENISKGIPC 374
BLAST of Lag0017648.1 vs. NCBI nr
Match:
KAE8649224.1 (hypothetical protein Csa_014966 [Cucumis sativus])
HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0
Query: 2 PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q + + +++ Q S EN
Sbjct: 255 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 314
Query: 62 -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
SV KK+K K V+ ++PEN+ G P
Sbjct: 315 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 374
BLAST of Lag0017648.1 vs. NCBI nr
Match:
XP_031740251.1 (uncharacterized protein LOC101213947 [Cucumis sativus])
HSP 1 Score: 62.4 bits (150), Expect = 3.2e-06
Identity = 45/131 (34.35%), Postives = 64/131 (48.85%), Query Frame = 0
Query: 2 PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKGSSVKTEAPRRKQSSNKEN----- 61
PEHRG +RGVG FV+ +++ NVA+ N KLSQ+ Q + + +++ Q S EN
Sbjct: 259 PEHRGRIRGVGEFVSPALHVNVARGNLKLSQQSQDEDETQQSQPENETQQSQAENETQQS 318
Query: 62 -----------SVTHKKSKGKDVR------------------------EKPENLEGGTPY 93
SV KK+K K V+ ++PEN+ G P
Sbjct: 319 QEENETRQSQSSVLRKKTKEKKVQKGKKVPKGKMVVKKPEEILEVQVLQEPENILKGIPC 378
BLAST of Lag0017648.1 vs. NCBI nr
Match:
XP_038895921.1 (uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895924.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_038895927.1 uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida])
HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 46/116 (39.66%), Postives = 60/116 (51.72%), Query Frame = 0
Query: 2 PEHRGCVRGVGVFVTLSVYYNVAKENSKLSQKPQSKG----------------------- 61
PEHRG +RGVG FV+ +++YNVAK KL Q+ Q++
Sbjct: 255 PEHRGRIRGVGEFVSPALHYNVAKGKLKLIQESQNEAETQQSQDKDETQQSQDKDETRQS 314
Query: 62 -SSVKTEAPRRKQSSNKENSVTHKK-SKGKDVREKPENLEGGTPYHLAIGSMDNIV 93
SSV + +RK+ N KK KGK V + PE + G P HLAIGS+DNIV
Sbjct: 315 RSSVVEKKTKRKRVQKGRNVQKRKKVPKGKMVVKDPEEILEGIPCHLAIGSVDNIV 370
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008451868.1 | 3.4e-08 | 37.40 | PREDICTED: uncharacterized protein LOC103493028 isoform X1 [Cucumis melo] >XP_00... | [more] |
XP_016901190.1 | 3.4e-08 | 37.40 | PREDICTED: uncharacterized protein LOC103493028 isoform X2 [Cucumis melo] | [more] |
KAE8649224.1 | 3.2e-06 | 34.35 | hypothetical protein Csa_014966 [Cucumis sativus] | [more] |
XP_031740251.1 | 3.2e-06 | 34.35 | uncharacterized protein LOC101213947 [Cucumis sativus] | [more] |
XP_038895921.1 | 4.1e-06 | 39.66 | uncharacterized protein LOC120084092 isoform X1 [Benincasa hispida] >XP_03889592... | [more] |
Match Name | E-value | Identity | Description | |
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name | Unique Name | Type |
Lag0017648 | Lag0017648 | gene |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
Lag0017648.1.exon1 | Lag0017648.1.exon1 | exon |
Lag0017648.1.exon2 | Lag0017648.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Type |
cds.Lag0017648.1 | cds.Lag0017648.1 | CDS |
cds.Lag0017648.1 | cds.Lag0017648.1_2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Type |
Lag0017648.1 | Lag0017648.1-protein | polypeptide |