|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACGTATTTATCTTGTGTTGACTTTTTTTCAATGAAAAATATAAGTAACTCATATAATATTTTTTTTAGTACTTCAGAGATACGTATCTAACCTGTAATTTGACATATCTAATTTTACATGAAGAAAAAGATAAATAATTCATCTAATATTTTTAACTCAAAGCTAAGTAACATGTTTACAAAGCTCACTGCCCCAATCGTAACTAAAAGGAAAAAATCAGAGTAAAAGACCAAACATTAGAATAATTTTACCTTCATCTTAACATTTTAATATGAGATAGTTGCAAATTTAGCAATTAAATTCAAAAAAATTAAGTGTATAGCAAAATTTGTCAAATTCTATCAATGATAGAGTTTATCACTGATAGACCATATTACAAAAATTGGTCTATCATCGATAGATCATACGAGTCTATGAGTGATACAAGTCTAACAACGATAATTTTGCTATATTTGCAATTTTTTAAAAATGTTGCTATATCCTTAATTATTATTCATCAAAAGGCTATCAATTACAATTACCCTTTCTAATATTGCTTTTTTTGTATTAATATTTTAATGTTCGTATTATAATTTGTACTACCACGATTAACTTGACATTTTATGATTTTGAAATGTTTTTTTTTTCTTTTATTGTGTGGATTACTTTTTGTATATTGATGTTAAATGCTTTTTCCCAAGAAGAGAAGGCATTGTTGAATCCTATCTTTGTATTCTTATTTGTGGGTTCAAAGACGTTTTAAAAATGATCAAACTTACTCAATCAGTTACCAACCTTCAAAGACTTTAGGCATCTCTTAGTTCTTACCCACCTTTGAAAGTAAAATGAGTATAAAAAAAATGTGGGTGAAGTGAAGCTTTTCTTTTAAAAAATTAATAAAATAACTACAACCTCCCGTTTTAAGAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA mRNA sequence ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA Coding sequence (CDS) ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA Protein sequence MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLCSLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY*
Homology
BLAST of CsaV3_5G014100.1 vs. NCBI nr
Match: KGN49578.1 (hypothetical protein Csa_018383 [Cucumis sativus]) HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query: 1 MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1 MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
Query: 61 SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61 SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115
BLAST of CsaV3_5G014100.1 vs. ExPASy TrEMBL
Match: A0A0A0KJ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1) HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56 Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0
Query: 1 MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1 MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
Query: 61 SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61 SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN49578.1 | 4.1e-56 | 100.00 | hypothetical protein Csa_018383 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KJ70 | 2.0e-56 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G014100.1.exon1 | CsaV3_5G014100.1.exon1 | exon |
| CsaV3_5G014100.1.exon2 | CsaV3_5G014100.1.exon2 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G014100.1.cds1 | CsaV3_5G014100.1.cds1 | CDS |
| CsaV3_5G014100.1.cds2 | CsaV3_5G014100.1.cds2 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CsaV3_5G014100.1 | CsaV3_5G014100.1-protein | polypeptide |
|
