CsaV3_5G014100.1 (mRNA) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_5G014100.1
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr5: 11018619 .. 11019868 (+)
Sequence length	348
RNA-Seq Expression	CsaV3_5G014100.1
Synteny	CsaV3_5G014100.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACGTATTTATCTTGTGTTGACTTTTTTTCAATGAAAAATATAAGTAACTCATATAATATTTTTTTTAGTACTTCAGAGATACGTATCTAACCTGTAATTTGACATATCTAATTTTACATGAAGAAAAAGATAAATAATTCATCTAATATTTTTAACTCAAAGCTAAGTAACATGTTTACAAAGCTCACTGCCCCAATCGTAACTAAAAGGAAAAAATCAGAGTAAAAGACCAAACATTAGAATAATTTTACCTTCATCTTAACATTTTAATATGAGATAGTTGCAAATTTAGCAATTAAATTCAAAAAAATTAAGTGTATAGCAAAATTTGTCAAATTCTATCAATGATAGAGTTTATCACTGATAGACCATATTACAAAAATTGGTCTATCATCGATAGATCATACGAGTCTATGAGTGATACAAGTCTAACAACGATAATTTTGCTATATTTGCAATTTTTTAAAAATGTTGCTATATCCTTAATTATTATTCATCAAAAGGCTATCAATTACAATTACCCTTTCTAATATTGCTTTTTTTGTATTAATATTTTAATGTTCGTATTATAATTTGTACTACCACGATTAACTTGACATTTTATGATTTTGAAATGTTTTTTTTTTCTTTTATTGTGTGGATTACTTTTTGTATATTGATGTTAAATGCTTTTTCCCAAGAAGAGAAGGCATTGTTGAATCCTATCTTTGTATTCTTATTTGTGGGTTCAAAGACGTTTTAAAAATGATCAAACTTACTCAATCAGTTACCAACCTTCAAAGACTTTAGGCATCTCTTAGTTCTTACCCACCTTTGAAAGTAAAATGAGTATAAAAAAAATGTGGGTGAAGTGAAGCTTTTCTTTTAAAAAATTAATAAAATAACTACAACCTCCCGTTTTAAGAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

mRNA sequence

ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

Coding sequence (CDS)

ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

Protein sequence

MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLCSLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY*

Homology

[Close]

BLAST of CsaV3_5G014100.1 vs. NCBI nr
Match: KGN49578.1 (hypothetical protein Csa_018383 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
           MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60

Query: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
           SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115

[Close]

BLAST of CsaV3_5G014100.1 vs. ExPASy TrEMBL
Match: A0A0A0KJ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
           MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60

Query: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
           SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115

The following BLAST results are available for this feature:

BLAST of CsaV3_5G014100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49578.1	4.1e-56	100.00	hypothetical protein Csa_018383 [Cucumis sativus]	[more]

BLAST of CsaV3_5G014100.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_5G014100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ70	2.0e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1	[more]

BLAST of CsaV3_5G014100.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsaV3_5G014100	CsaV3_5G014100	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G014100.1.exon1	CsaV3_5G014100.1.exon1	exon
CsaV3_5G014100.1.exon2	CsaV3_5G014100.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G014100.1.cds1	CsaV3_5G014100.1.cds1	CDS
CsaV3_5G014100.1.cds2	CsaV3_5G014100.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsaV3_5G014100.1	CsaV3_5G014100.1-protein	polypeptide