CsaV3_5G014100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_5G014100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr5: 11018619 .. 11019868 (+)
RNA-Seq ExpressionCsaV3_5G014100
SyntenyCsaV3_5G014100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACGTATTTATCTTGTGTTGACTTTTTTTCAATGAAAAATATAAGTAACTCATATAATATTTTTTTTAGTACTTCAGAGATACGTATCTAACCTGTAATTTGACATATCTAATTTTACATGAAGAAAAAGATAAATAATTCATCTAATATTTTTAACTCAAAGCTAAGTAACATGTTTACAAAGCTCACTGCCCCAATCGTAACTAAAAGGAAAAAATCAGAGTAAAAGACCAAACATTAGAATAATTTTACCTTCATCTTAACATTTTAATATGAGATAGTTGCAAATTTAGCAATTAAATTCAAAAAAATTAAGTGTATAGCAAAATTTGTCAAATTCTATCAATGATAGAGTTTATCACTGATAGACCATATTACAAAAATTGGTCTATCATCGATAGATCATACGAGTCTATGAGTGATACAAGTCTAACAACGATAATTTTGCTATATTTGCAATTTTTTAAAAATGTTGCTATATCCTTAATTATTATTCATCAAAAGGCTATCAATTACAATTACCCTTTCTAATATTGCTTTTTTTGTATTAATATTTTAATGTTCGTATTATAATTTGTACTACCACGATTAACTTGACATTTTATGATTTTGAAATGTTTTTTTTTTCTTTTATTGTGTGGATTACTTTTTGTATATTGATGTTAAATGCTTTTTCCCAAGAAGAGAAGGCATTGTTGAATCCTATCTTTGTATTCTTATTTGTGGGTTCAAAGACGTTTTAAAAATGATCAAACTTACTCAATCAGTTACCAACCTTCAAAGACTTTAGGCATCTCTTAGTTCTTACCCACCTTTGAAAGTAAAATGAGTATAAAAAAAATGTGGGTGAAGTGAAGCTTTTCTTTTAAAAAATTAATAAAATAACTACAACCTCCCGTTTTAAGAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

mRNA sequence

ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

Coding sequence (CDS)

ATGTCAGATGTTAGTACTTCCATATACTTTCCTAGATCCGTATCCGACACACGATTTGACAACCTGAGCCGCGCGATCCCATCATTCATATTTCTCCCTTTCTCACTAACTCGCCCAACGCCAGCTCTCCCCGTTCGCCATTCGCCGGCGCAGCCGTCCACCGTCGCCCCTCATTTGTGCTCTCTCTACTCTATCCCATCCATCTCTGCTTGCTTCTCCGGACCCCGCACTGTAGCCACACTACAGCCTCCGTCACCCCGTCGTCGCTGCCAGTCGAACCCCACAGCCGTCGCCGGATTTGTGATTGTGAGTAAGGTTCTTCTGGATATTTCTGTGAGTTTTTACTGA

Protein sequence

MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLCSLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY*
Homology
[Close]
BLAST of CsaV3_5G014100 vs. NCBI nr
Match: KGN49578.1 (hypothetical protein Csa_018383 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.1e-56
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
           MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60

Query: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
           SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115

[Close]
BLAST of CsaV3_5G014100 vs. ExPASy TrEMBL
Match: A0A0A0KJ70 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.0e-56
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60
           MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC
Sbjct: 1   MSDVSTSIYFPRSVSDTRFDNLSRAIPSFIFLPFSLTRPTPALPVRHSPAQPSTVAPHLC 60

Query: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 116
           SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY
Sbjct: 61  SLYSIPSISACFSGPRTVATLQPPSPRRRCQSNPTAVAGFVIVSKVLLDISVSFY 115

The following BLAST results are available for this feature:
BLAST of CsaV3_5G014100 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN49578.14.1e-56100.00hypothetical protein Csa_018383 [Cucumis sativus][more]
BLAST of CsaV3_5G014100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_5G014100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJ702.0e-56100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G011680 PE=4 SV=1[more]
BLAST of CsaV3_5G014100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_5G014100.1CsaV3_5G014100.1mRNA