Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA
mRNA sequence
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA
Coding sequence (CDS)
ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA
Protein sequence
MQALWDDSITPKNTLHQLLAISHTIGFDAIGFLVNLDLDVQSRRNLVQPTRISCKLVIPLSLQDDLHRASLKLKKKSLVPIALVPFTYSLFFSPLLQSSKIELLTT
Homology
BLAST of Clc08G05240.1 vs. NCBI nr
Match:
XP_038899078.1 (U-box domain-containing protein 30-like isoform X1 [Benincasa hispida])
HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173
BLAST of Clc08G05240.1 vs. NCBI nr
Match:
XP_038899079.1 (U-box domain-containing protein 30-like isoform X2 [Benincasa hispida])
HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 33 MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 92
BLAST of Clc08G05240.1 vs. NCBI nr
Match:
XP_022981987.1 (U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box domain-containing protein 30-like [Cucurbita maxima])
HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175
BLAST of Clc08G05240.1 vs. NCBI nr
Match:
XP_022941310.1 (U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-box domain-containing protein 30-like [Cucurbita moschata])
HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173
BLAST of Clc08G05240.1 vs. NCBI nr
Match:
XP_023524197.1 (U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_023524198.1 U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175
BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match:
A0A2C9U1C6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLLAISHTIGF--------DAIGFLVNLDLDVQSRRNLVQPTRI 54
+Q LWDD+++PK TL QL+ + + +AIGFLVNLDLD+ SR +QP +I
Sbjct: 61 LQELWDDTVSPKTTLQQLILRGFSQRYLAMKKRSREAIGFLVNLDLDLTSREIFLQPAKI 120
BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match:
A0A6J1IVG5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175
BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match:
A0A6J1FKS4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173
BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match:
A0A6J1INU1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 102 MQELWDDSITPNNTLHQLINSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161
BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match:
A0A6J1FA26 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653 PE=4 SV=1)
HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
Query: 1 MQALWDDSITPKNTLHQLL----------------------------------------- 54
MQ LWDDSITP NTLHQL+
Sbjct: 102 MQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038899078.1 | 5.7e-04 | 31.20 | U-box domain-containing protein 30-like isoform X1 [Benincasa hispida] | [more] |
| XP_038899079.1 | 5.7e-04 | 31.20 | U-box domain-containing protein 30-like isoform X2 [Benincasa hispida] | [more] |
| XP_022981987.1 | 7.4e-04 | 30.95 | U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box... | [more] |
| XP_022941310.1 | 7.4e-04 | 30.95 | U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-b... | [more] |
| XP_023524197.1 | 7.4e-04 | 30.95 | U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_0235241... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A2C9U1C6 | 7.3e-05 | 45.90 | Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=... | [more] |
| A0A6J1IVG5 | 3.6e-04 | 30.95 | RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 P... | [more] |
| A0A6J1FKS4 | 3.6e-04 | 30.95 | RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650... | [more] |
| A0A6J1INU1 | 3.6e-04 | 30.95 | RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 P... | [more] |
| A0A6J1FA26 | 3.6e-04 | 30.95 | RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
