Clc08G05240 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA MQALWDDSITPKNTLHQLLAISHTIGFDAIGFLVNLDLDVQSRRNLVQPTRISCKLVIPLSLQDDLHRASLKLKKKSLVPIALVPFTYSLFFSPLLQSSKIELLTT Homology
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_038899078.1 (U-box domain-containing protein 30-like isoform X1 [Benincasa hispida]) HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04 Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_038899079.1 (U-box domain-containing protein 30-like isoform X2 [Benincasa hispida]) HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04 Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_022981987.1 (U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box domain-containing protein 30-like [Cucurbita maxima]) HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_022941310.1 (U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-box domain-containing protein 30-like [Cucurbita moschata]) HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. NCBI nr
Match: XP_023524197.1 (U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_023524198.1 U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A2C9U1C6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05 Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1IVG5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1FKS4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1INU1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
BLAST of Clc08G05240 vs. ExPASy TrEMBL
Match: A0A6J1FA26 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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