Clc08G05240.1 (mRNA) Watermelon (cordophanus) v2

Overview


Name	Clc08G05240.1
Type	mRNA
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr08: 16151252 .. 16151572 (-)
Sequence length	321
RNA-Seq Expression	Clc08G05240.1
Synteny	Clc08G05240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

mRNA sequence

ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

Coding sequence (CDS)

ATGCAAGCGCTTTGGGATGATTCAATCACTCCCAAAAACACTCTTCACCAACTCTTGGCCATATCACACACGATTGGCTTTGATGCCATTGGGTTTTTGGTGAACTTGGATCTCGATGTCCAGTCTAGGAGAAACCTTGTTCAACCTACCAGGATTTCGTGCAAATTGGTCATTCCACTCTCCCTTCAAGATGATCTTCATCGTGCTTCACTCAAGTTGAAGAAGAAATCCCTCGTCCCTATTGCTCTGGTTCCTTTCACTTACTCATTATTCTTTTCCCCACTCCTTCAATCTTCTAAAATTGAGCTTCTAACCACGTAA

Protein sequence

MQALWDDSITPKNTLHQLLAISHTIGFDAIGFLVNLDLDVQSRRNLVQPTRISCKLVIPLSLQDDLHRASLKLKKKSLVPIALVPFTYSLFFSPLLQSSKIELLTT

Homology

[Close]

BLAST of Clc08G05240.1 vs. NCBI nr
Match: XP_038899078.1 (U-box domain-containing protein 30-like isoform X1 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]

BLAST of Clc08G05240.1 vs. NCBI nr
Match: XP_038899079.1 (U-box domain-containing protein 30-like isoform X2 [Benincasa hispida])

HSP 1 Score: 54.7 bits (130), Expect = 5.7e-04
Identity = 39/125 (31.20%), Postives = 44/125 (35.20%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 33  MQELWDDSITPNNTLHQLIYSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 92

[Close]

BLAST of Clc08G05240.1 vs. NCBI nr
Match: XP_022981987.1 (U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box domain-containing protein 30-like [Cucurbita maxima])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]

BLAST of Clc08G05240.1 vs. NCBI nr
Match: XP_022941310.1 (U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-box domain-containing protein 30-like [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]

BLAST of Clc08G05240.1 vs. NCBI nr
Match: XP_023524197.1 (U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_023524198.1 U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match: A0A2C9U1C6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.3e-05
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLLAISHTIGF--------DAIGFLVNLDLDVQSRRNLVQPTRI 54
           +Q LWDD+++PK TL QL+    +  +        +AIGFLVNLDLD+ SR   +QP +I
Sbjct: 61  LQELWDDTVSPKTTLQQLILRGFSQRYLAMKKRSREAIGFLVNLDLDLTSREIFLQPAKI 120

[Close]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match: A0A6J1IVG5 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 116 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 175

[Close]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match: A0A6J1FKS4 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 114 MQELWDDSITPNNTLHQLIYSWFWQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 173

[Close]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match: A0A6J1INU1 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 102 MQELWDDSITPNNTLHQLINSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161

[Close]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL
Match: A0A6J1FA26 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 39/126 (30.95%), Postives = 44/126 (34.92%), Query Frame = 0


Query: 1   MQALWDDSITPKNTLHQLL----------------------------------------- 54
           MQ LWDDSITP NTLHQL+                                         
Sbjct: 102 MQELWDDSITPNNTLHQLIHSWFSQKYLAMKKRSEDVQGRALELLDTLKKVKGQARVRAL 161

The following BLAST results are available for this feature:

BLAST of Clc08G05240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038899078.1	5.7e-04	31.20	U-box domain-containing protein 30-like isoform X1 [Benincasa hispida]	[more]
XP_038899079.1	5.7e-04	31.20	U-box domain-containing protein 30-like isoform X2 [Benincasa hispida]	[more]
XP_022981987.1	7.4e-04	30.95	U-box domain-containing protein 30-like [Cucurbita maxima] >XP_022981988.1 U-box...	[more]
XP_022941310.1	7.4e-04	30.95	U-box domain-containing protein 30-like [Cucurbita moschata] >XP_022941311.1 U-b...	[more]
XP_023524197.1	7.4e-04	30.95	U-box domain-containing protein 30-like [Cucurbita pepo subsp. pepo] >XP_0235241...	[more]

BLAST of Clc08G05240.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2C9U1C6	7.3e-05	45.90	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G048200 PE=4 SV=...	[more]
A0A6J1IVG5	3.6e-04	30.95	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111480973 P...	[more]
A0A6J1FKS4	3.6e-04	30.95	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111446650...	[more]
A0A6J1INU1	3.6e-04	30.95	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111477220 P...	[more]
A0A6J1FA26	3.6e-04	30.95	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111443653...	[more]

BLAST of Clc08G05240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Clc08G05240	Clc08G05240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G05240.1-exon	Clc08G05240.1-exon-ClcChr08:16151252..16151572	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Clc08G05240.1-cds	Clc08G05240.1-cds-ClcChr08:16151252..16151572	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Clc08G05240.1	Clc08G05240.1-protein	polypeptide