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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGTATGTCCAGAATTGACGAGAGGGAAGCCGAAATTGTTAAAGCTGATTATTTATACCACAAAAATGCGCCAACGGGATTATTTATTTATTTATTTTTAGTTTCATTAAATTGGAGTTGAAATGGGAAATTTTTGGGATTGTTTTTAATATTATTATTTTCATAAAATATTTCTACAAATTTCATTCATTAATTTTTTCTTTTATTTTCCGACTTTAAAAAAATGTTTAATAAATTTACTAAATATTTTTATTTTATATTCCATTTAATGTTTTATTTTAATATTTAGTTCGTGTAAATATATAATAGTTCAAACCCACCGCTAATTGATATTATTCATAATTTTAATATACGTATGTTACGAGAGGTTTCAACACTTTTATAAGGAATGTTTGGTTCCCCTCTCGTGACATTTTTGTCCACCTTACAGATAAACGTGCCTCCAATAATTTGTATATTTCTAGACAAGATGCACTGACATGAATCCCGACCTATGTAAGTTCCTATTTACCCTAAAAAAATTTCATAGTCACAACATTGTTACAATTTTGCCCTTTATACAGACACCGACTTGCCTAAGCATATAGGGGTCTTTTTATCTCTAAAACTCTGAGTTAAAAATATTTTAATTTTTCTTAGGGTTTTCGCATATTCTTACCATCTTGGTTCCCGGGCATATAAAAAATCACTTTGGTGGGTCAAATAGGAGATGAAAAGTAAGAGTTTTACACCAGAAAGTTTACTGTAAGCCAAATCTCGAGAAATTGAACAACATAGAAAAACAATGGAGAGAGAATCGATCAATTGATAGACAACTGGACAAACAACTCGACGAGTTATCAAACCCTAAAACGTAAATCACTGTTCCTCCTCGAATAATGTTATATATATATATACACATACATACATGATTTTTACCCGTGTCTAATCATTTGTCTATGATATAAATGAACACTTCATACACGAAAAAAACATAGATCGTTTTTAAATTTATTTAGAATTAGACGAAAGTAAAAGGGTAAAATAGTCAATACCTCTTTTCATAATATATTATTTTGGTAATATACTTATTGAAAAATATTCTCTTTACTTCAAAAATAGTATTTTAGTTTCATATTATTAAAAAATTTAAAAAAAAATGCTCTTTTTTTAAATATGCATTAGAAATTTCTTTAAATATTATTTATTAAAAAAAAACCACAATAATTTCATATTCTCAAAATATTATTTTGGATTTTTATTATTGACTTTTTAAATATTAATTATTATTATTTAAAAATATTATTCTATTTTTTAATAAAATAAAAGGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA mRNA sequence ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA Coding sequence (CDS) ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA Protein sequence MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTIDRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN
Homology
BLAST of Carg05097 vs. NCBI nr
Match: KAG7025465.1 (hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0
Query: 1 MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60
MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI
Sbjct: 1 MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60
Query: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 98
DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN
Sbjct: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 97
BLAST of Carg05097 vs. NCBI nr
Match: KAG6593057.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17 Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0
Query: 1 MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQ 56
MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAE S + +
Sbjct: 1 MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEMKSKSFTPE 55
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG7025465.1 | 3.9e-44 | 100.00 | hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG6593057.1 | 2.4e-17 | 85.45 | Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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| Match Name | E-value | Identity | Description | |
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InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
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| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 78..97 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
Relationships
The following mRNA feature(s) are a part of this gene:
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