Carg05097 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg05097
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr08: 1591589 .. 1593188 (+)
RNA-Seq Expression	Carg05097
Synteny	Carg05097

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGTATGTCCAGAATTGACGAGAGGGAAGCCGAAATTGTTAAAGCTGATTATTTATACCACAAAAATGCGCCAACGGGATTATTTATTTATTTATTTTTAGTTTCATTAAATTGGAGTTGAAATGGGAAATTTTTGGGATTGTTTTTAATATTATTATTTTCATAAAATATTTCTACAAATTTCATTCATTAATTTTTTCTTTTATTTTCCGACTTTAAAAAAATGTTTAATAAATTTACTAAATATTTTTATTTTATATTCCATTTAATGTTTTATTTTAATATTTAGTTCGTGTAAATATATAATAGTTCAAACCCACCGCTAATTGATATTATTCATAATTTTAATATACGTATGTTACGAGAGGTTTCAACACTTTTATAAGGAATGTTTGGTTCCCCTCTCGTGACATTTTTGTCCACCTTACAGATAAACGTGCCTCCAATAATTTGTATATTTCTAGACAAGATGCACTGACATGAATCCCGACCTATGTAAGTTCCTATTTACCCTAAAAAAATTTCATAGTCACAACATTGTTACAATTTTGCCCTTTATACAGACACCGACTTGCCTAAGCATATAGGGGTCTTTTTATCTCTAAAACTCTGAGTTAAAAATATTTTAATTTTTCTTAGGGTTTTCGCATATTCTTACCATCTTGGTTCCCGGGCATATAAAAAATCACTTTGGTGGGTCAAATAGGAGATGAAAAGTAAGAGTTTTACACCAGAAAGTTTACTGTAAGCCAAATCTCGAGAAATTGAACAACATAGAAAAACAATGGAGAGAGAATCGATCAATTGATAGACAACTGGACAAACAACTCGACGAGTTATCAAACCCTAAAACGTAAATCACTGTTCCTCCTCGAATAATGTTATATATATATATACACATACATACATGATTTTTACCCGTGTCTAATCATTTGTCTATGATATAAATGAACACTTCATACACGAAAAAAACATAGATCGTTTTTAAATTTATTTAGAATTAGACGAAAGTAAAAGGGTAAAATAGTCAATACCTCTTTTCATAATATATTATTTTGGTAATATACTTATTGAAAAATATTCTCTTTACTTCAAAAATAGTATTTTAGTTTCATATTATTAAAAAATTTAAAAAAAAATGCTCTTTTTTTAAATATGCATTAGAAATTTCTTTAAATATTATTTATTAAAAAAAAACCACAATAATTTCATATTCTCAAAATATTATTTTGGATTTTTATTATTGACTTTTTAAATATTAATTATTATTATTTAAAAATATTATTCTATTTTTTAATAAAATAAAAGGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

mRNA sequence

ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

Coding sequence (CDS)

ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

Protein sequence

MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTIDRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN

Homology

[Close]

BLAST of Carg05097 vs. NCBI nr
Match: KAG7025465.1 (hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60
          MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI
Sbjct: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60

Query: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 98
          DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN
Sbjct: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 97

[Close]

BLAST of Carg05097 vs. NCBI nr
Match: KAG6593057.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQ 56
          MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAE    S + +
Sbjct: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEMKSKSFTPE 55

The following BLAST results are available for this feature:

BLAST of Carg05097 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025465.1	3.9e-44	100.00	hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6593057.1	2.4e-17	85.45	Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Carg05097 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05097 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg05097 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05097-RA	Carg05097-RA	mRNA