Carg05097 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg05097
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr08: 1591589 .. 1593188 (+)
RNA-Seq ExpressionCarg05097
SyntenyCarg05097
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGTATGTCCAGAATTGACGAGAGGGAAGCCGAAATTGTTAAAGCTGATTATTTATACCACAAAAATGCGCCAACGGGATTATTTATTTATTTATTTTTAGTTTCATTAAATTGGAGTTGAAATGGGAAATTTTTGGGATTGTTTTTAATATTATTATTTTCATAAAATATTTCTACAAATTTCATTCATTAATTTTTTCTTTTATTTTCCGACTTTAAAAAAATGTTTAATAAATTTACTAAATATTTTTATTTTATATTCCATTTAATGTTTTATTTTAATATTTAGTTCGTGTAAATATATAATAGTTCAAACCCACCGCTAATTGATATTATTCATAATTTTAATATACGTATGTTACGAGAGGTTTCAACACTTTTATAAGGAATGTTTGGTTCCCCTCTCGTGACATTTTTGTCCACCTTACAGATAAACGTGCCTCCAATAATTTGTATATTTCTAGACAAGATGCACTGACATGAATCCCGACCTATGTAAGTTCCTATTTACCCTAAAAAAATTTCATAGTCACAACATTGTTACAATTTTGCCCTTTATACAGACACCGACTTGCCTAAGCATATAGGGGTCTTTTTATCTCTAAAACTCTGAGTTAAAAATATTTTAATTTTTCTTAGGGTTTTCGCATATTCTTACCATCTTGGTTCCCGGGCATATAAAAAATCACTTTGGTGGGTCAAATAGGAGATGAAAAGTAAGAGTTTTACACCAGAAAGTTTACTGTAAGCCAAATCTCGAGAAATTGAACAACATAGAAAAACAATGGAGAGAGAATCGATCAATTGATAGACAACTGGACAAACAACTCGACGAGTTATCAAACCCTAAAACGTAAATCACTGTTCCTCCTCGAATAATGTTATATATATATATACACATACATACATGATTTTTACCCGTGTCTAATCATTTGTCTATGATATAAATGAACACTTCATACACGAAAAAAACATAGATCGTTTTTAAATTTATTTAGAATTAGACGAAAGTAAAAGGGTAAAATAGTCAATACCTCTTTTCATAATATATTATTTTGGTAATATACTTATTGAAAAATATTCTCTTTACTTCAAAAATAGTATTTTAGTTTCATATTATTAAAAAATTTAAAAAAAAATGCTCTTTTTTTAAATATGCATTAGAAATTTCTTTAAATATTATTTATTAAAAAAAAACCACAATAATTTCATATTCTCAAAATATTATTTTGGATTTTTATTATTGACTTTTTAAATATTAATTATTATTATTTAAAAATATTATTCTATTTTTTAATAAAATAAAAGGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

mRNA sequence

ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

Coding sequence (CDS)

ATGAAGAAGTCGTCTCGCAGTTCCATTAGACATGACGACGGCGGAGGGATTCAGCTGGGAAATTTTGTCGGCAAGAATTTGACGCGCAAGAGAAGAAGGATTGCGGCAGATCTTTGGCGGTTTTGTTACAGAGCCGAGAAATCGGAAGTTTCTGTGTCGACACAATTCTCTGGAACAATCGACCGTTTTATTTCCCCCGTAAACTTGCTTTTTCTGACAGATCCACAAACCCTAGCTCCGGCATCTCCTTCGAGTTCTTCGGCATCTTCAAACTCAATGGCGCCTGCAAACTAA

Protein sequence

MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTIDRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN
Homology
[Close]
BLAST of Carg05097 vs. NCBI nr
Match: KAG7025465.1 (hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.0 bits (476), Expect = 3.9e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60
          MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI
Sbjct: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQFSGTI 60

Query: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 98
          DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN
Sbjct: 61 DRFISPVNLLFLTDPQTLAPASPSSSSASSNSMAPAN 97

[Close]
BLAST of Carg05097 vs. NCBI nr
Match: KAG6593057.1 (Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0 

Query: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEKSEVSVSTQ 56
          MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAE    S + +
Sbjct: 1  MKKSSRSSIRHDDGGGIQLGNFVGKNLTRKRRRIAADLWRFCYRAEMKSKSFTPE 55

The following BLAST results are available for this feature:
BLAST of Carg05097 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7025465.13.9e-44100.00hypothetical protein SDJN02_11960, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6593057.12.4e-1785.45Lysine-specific demethylase, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg05097 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05097 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg05097 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05097-RACarg05097-RAmRNA