CmoCh11G018520.1 (mRNA) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh11G018520.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	fasciclin-like arabinogalactan protein 7
Location	Cmo_Chr11: 12916471 .. 12918291 (+)
Sequence length	1028
RNA-Seq Expression	CmoCh11G018520.1
Synteny	CmoCh11G018520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACCCTACATGCCCAAGTTCTTAAGGAAATGCCTTTCAAATAAAGTATGGTTTTTTATTTTATGTCTCAAGGAAGATCCCAGCTCTTTGTTCATCACCCAATTACTCTCTCTTCTTCAAACCCACCTCCCCATTTGCTTTTCTCCTTCATTTCCTTTAAATACTTGCTTCGATCTTCATCTCTTTCCCCATTATTTCTCTGTCAGAGCTTCTCTCTTAGCCTGCCTGGTCAGTCTCCTTCTCTCATTGTCTCTGCCTTTTGGCATTGCTAATTTAGGCCTCTTTTGGGTTTGGATTTGCTTGGTTTTGGCTGCTGTAACTTGTGATGGGCTGATCTAGATCTGGGTTTTTCTTACTTTTTTGTTTGGGGTTTTGTTCAGGATTTGAAGGGCTGATGGGACATTTTGAATTGTGTTCTTGTGTTTGTTTGTCTTTGAATTCTGCTGTTTTTGGCTTTGTTTTTCAAGTTATACTGTTTGATTTACTTGTCTGGATCTTTGATTGTGCTGTTTTCTTGTTCTTCTTGCTGGTATGTGTTTGCTCTGTTTTGGCTAGTTAGTGAGCTAGTGAGATCTGGATTTTGAAATTTAAGTCTATAAACCTAACTTTTAATCTTGTTAAATGCTGTTTTGGACTTGTTTAGTGTAGTTCTTGCTGAGATTTGATCCATTTGGGGAATTATACAAGCTTTGGCAATGGATTTTATTGAATTTTTCATGAATGCATATCAACTGTTTGTGAAAATGTCACTGTGAACTTATGAAGCATATCAGTTTGTTTAAGATATAGCTGAGATCCGATGATGGGCAGGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGATTGTGATCAGAAATCCTACCACCCATTTATTACATTAAGAAAAACTATATTGCCCATTTTGTTACGTTATTCATCTAAAGCTTCATTTTTTTTTTCTTCTGAACATATATATATGTTGTTGGATTTGTGCAAGAGGTTTCCTTTTTCGTTCCCTCTCTCCACTGCCAACAGATACGTTACGTATCGTCATCAGACTCATGGTTTTAAAACGCGTTTAGCACTGC

mRNA sequence

ATGCTACCCTACATGCCCAAGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGATTGTGATCAGAAATCCTACCACCCATTTATTACATTAAGAAAAACTATATTGCCCATTTTGTTACGTTATTCATCTAAAGCTTCATTTTTTTTTTCTTCTGAACATATATATATGTTGTTGGATTTGTGCAAGAGGTTTCCTTTTTCGTTCCCTCTCTCCACTGCCAACAGATACGTTACGTATCGTCATCAGACTCATGGTTTTAAAACGCGTTTAGCACTGC

Coding sequence (CDS)

ATGCTACCCTACATGCCCAAGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGA

Protein sequence

MLPYMPKFWRMELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIINWGILIHVVLAISCGFLF

Homology

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot
Match: Q9SJ81 (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana OX=3702 GN=FLA7 PE=2 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.6e-80
Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 10  RMELSMIFTVCSALLLLSSSPADAKTASP--PLLSPTPAPAPAPDFVNLTDLLTVAGPFH 69
           +M+LS IF    AL++ S+S   AKTASP  P+L PTPAPAPAP+ VNLT+LL+VAGPFH
Sbjct: 3   KMQLS-IFIAVVALIVCSAS---AKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFH 62

Query: 70  TFLSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHG 129
           TFL YL ST VIETFQNQANNTEEG+TIFVPKD AF AQK P LSNLT+DQLK L+LFH 
Sbjct: 63  TFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHA 122

Query: 130 LPHYYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVA 189
           LPHYYSL+EF+NLS   P+ST AGGQYSL FTDVSGT+ I S WT TKVSSSV S+DPVA
Sbjct: 123 LPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVA 182

Query: 190 VYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPS-ADSDGKAAPSSQPKPSSSH 249
           VYQV+R+LLPEAIFGTD+PP PAPAPAP I  AP +DSPS ADS+G ++P S  K S   
Sbjct: 183 VYQVNRVLLPEAIFGTDVPPMPAPAPAP-IVSAP-SDSPSVADSEGASSPKSSHKNSGQK 239

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot
Match: Q8LEE9 (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 9.9e-32
Identity = 95/232 (40.95%), Postives = 135/232 (58.19%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDF-VNLTDLLTVAGPFHTF 70
           ME S+I  + + LLLL+++P         L  P+PA APAP    N+T +L  AG F  F
Sbjct: 1   MEHSLIILLFTVLLLLTTTPG-------ILSQPSPAVAPAPPGPTNVTKILEKAGQFTVF 60

Query: 71  LSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLP 130
           +  L+ST V      Q NN++ G+TIF P DS+F+  K  +L++LT++Q   L+ FH +P
Sbjct: 61  IRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIP 120

Query: 131 HYYSLAEFRNLSLQNPISTLAG----GQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDP 190
            Y S + F+ +S  NP+ T AG    G + LN T    T++I SG TNT VS +V+S   
Sbjct: 121 SYVSSSNFQTIS--NPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQ 180

Query: 191 VAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPS 238
           +AVYQVD++LLP+ +F    PP PAPAP+   +     DS S+  D  A  S
Sbjct: 181 LAVYQVDKVLLPQQVFDPR-PPAPAPAPSVSKSKKKKDDSDSSSDDSPADAS 222

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot
Match: Q9SIL7 (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 2.8e-26
Identity = 83/214 (38.79%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 38  PPLLSPTPAPAPAPDF--VNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQANNTEEGVTI 97
           P + S   APAP  +   +NLT +L     F T +  L +T+V      Q N++++G+TI
Sbjct: 19  PYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTI 78

Query: 98  FVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLA----G 157
           F P D+AF+  K  +L++LT  Q   LML+H +P YYSL++   L   NP+ T A    G
Sbjct: 79  FAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDL--LLASNPVRTQATGQDG 138

Query: 158 GQYSLNFTD--VSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTP 217
           G + LNFT    S  +++ +G   T++++++    P+AVY VD +LLPE +FGT   PT 
Sbjct: 139 GVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGTKTTPTG 198

Query: 218 APAPAPDIAIAPTADSPSADSDGKAAPSSQPKPS 244
           APAP    + +  ADSP+AD + K+A SS  + S
Sbjct: 199 APAPKSSTS-SSDADSPAADDEHKSAGSSVKRTS 229

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot
Match: Q8LEJ6 (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA11 PE=2 SV=2)

HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23
Identity = 79/223 (35.43%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 46  APAPAPDF-VNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQAN-NTEEGVTIFVPKDSAF 105
           APAP P    N+T +L  AG F  F+  L+ST+  +    Q N ++  G+T+F P D+AF
Sbjct: 26  APAPGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAF 85

Query: 106 SAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLAG----GQYSLNFT 165
           ++ K  +L++L++ Q   L+ FH LP   ++ +F+ +S  NP+ T AG    G++ LN T
Sbjct: 86  NSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVS--NPLRTQAGDGQNGKFPLNIT 145

Query: 166 DVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAI 225
                ++I +G  +  V++SV+S   +AVYQVD++LLP A+FG+ +    APAPAP+   
Sbjct: 146 SSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSV----APAPAPEKGG 205

Query: 226 APTADSPSADSDGKAAPSSQPKPSSSHRIINWGILIHVVLAIS 263
           + +  S S   DG  +  S     +      +GI I  V AI+
Sbjct: 206 SVSKGSASGGDDGGDSTDSSDAERTG---FGFGIRITTVAAIA 239

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot
Match: Q9ZWA8 (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.9e-23
Identity = 89/254 (35.04%), Postives = 130/254 (51.18%), Query Frame = 0


Query: 18  TVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFLSYLQSTK 77
           T+   LL+ +   A   TA P      PAP PA   +NLT +L   G F TF+  L  T+
Sbjct: 7   TLAPLLLIAAVLLATKATAQP----AAPAPEPAGP-INLTAILEKGGQFTTFIHLLNITQ 66

Query: 78  VIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEF 137
           V      Q N++ EG+T+F P D+AF   K  +L+ L+ D    L+L+H  P YYS+ + 
Sbjct: 67  VGSQVNIQVNSSSEGMTVFAPTDNAFQNLKPGTLNQLSPDDQVKLILYHVSPKYYSMDDL 126

Query: 138 RNLSLQNPISTLAGGQ----YSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDR 197
             LS+ NP+ T A G+    Y LNFT  +  I++ +G+  T++S+S+    P+AVY VD 
Sbjct: 127 --LSVSNPVRTQASGRDNGVYGLNFTGQTNQINVSTGYVETRISNSLRQQRPLAVYVVDM 186

Query: 198 ILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIINWGI 257
           +LLP  +FG       APAP        T DS S     K A S   K  S  + +  G 
Sbjct: 187 VLLPGEMFGEHKLSPIAPAPKSKSG-GVTDDSGST----KKAASPSDKSGSGEKKVGLGF 246

Query: 258 LIHVVLAISCGFLF 268
            + +++ +   FLF
Sbjct: 247 GLGLIV-LCLKFLF 247

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL
Match: A0A6J1EXB2 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111437019 PE=3 SV=1)

HSP 1 Score: 492.7 bits (1267), Expect = 1.0e-135
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 70
           MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL
Sbjct: 1   MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 60

Query: 71  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 130
           SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH
Sbjct: 61  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 120

Query: 131 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 190
           YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ
Sbjct: 121 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 180

Query: 191 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 250
           VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN
Sbjct: 181 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 240

Query: 251 WGILIHVVLAISCGFLF 268
           WGILIHVVLAISCGFLF
Sbjct: 241 WGILIHVVLAISCGFLF 257

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL
Match: A0A6J1JME9 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC111486507 PE=3 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 7.9e-133
Identity = 251/257 (97.67%), Postives = 255/257 (99.22%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 70
           MELSMIFTVCSALLLLSSSP+DAKTASPPLLS +PAPAPAPDFVNLTDLLTVAGPFHTFL
Sbjct: 1   MELSMIFTVCSALLLLSSSPSDAKTASPPLLSQSPAPAPAPDFVNLTDLLTVAGPFHTFL 60

Query: 71  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 130
           SYLQSTKVI+TFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH
Sbjct: 61  SYLQSTKVIDTFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 120

Query: 131 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 190
           YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ
Sbjct: 121 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 180

Query: 191 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 250
           VDRILLPE IFGTDIPPTPAPAPAPDIAIAPTAD+PSADSDGKAAPSSQPKPSSSHRIIN
Sbjct: 181 VDRILLPEVIFGTDIPPTPAPAPAPDIAIAPTADAPSADSDGKAAPSSQPKPSSSHRIIN 240

Query: 251 WGILIHVVLAISCGFLF 268
           WGILIHVVLAISCGFLF
Sbjct: 241 WGILIHVVLAISCGFLF 257

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL
Match: A0A6J1C1K1 (fasciclin-like arabinogalactan protein 7 OS=Momordica charantia OX=3673 GN=LOC111007542 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.3e-122
Identity = 233/257 (90.66%), Postives = 245/257 (95.33%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 70
           ME SMIFTVCSALLLLSSS ADA+TASPP LSPTPAPAPAPDFVNLTDLLTVAGPFHTFL
Sbjct: 1   MEFSMIFTVCSALLLLSSSAADAQTASPPSLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 60

Query: 71  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 130
           SYLQSTKVI+TFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSL+LFHGLPH
Sbjct: 61  SYLQSTKVIDTFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLILFHGLPH 120

Query: 131 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 190
           YYSLAEFRNLSLQNPI+T AGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ
Sbjct: 121 YYSLAEFRNLSLQNPIATFAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 180

Query: 191 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 250
           VD+ILLPEAIFGTDIPPTPAPAPAPD  + P AD+PSAD +GK APSS PKPSSSH+II+
Sbjct: 181 VDKILLPEAIFGTDIPPTPAPAPAPD--VTPPADAPSADHEGKVAPSSGPKPSSSHKIIS 240

Query: 251 WGILIHVVLAISCGFLF 268
           WG+LIH+VLAIS GFLF
Sbjct: 241 WGVLIHIVLAISAGFLF 255

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL
Match: A0A6J1I0D1 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC111468289 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.0e-120
Identity = 230/257 (89.49%), Postives = 245/257 (95.33%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 70
           ME SMIFTVCSALLLLSSS ADA+TASPP LSP PAPAPA DFVNLTDLLTVAGPFHTFL
Sbjct: 1   MEFSMIFTVCSALLLLSSSSADAQTASPPSLSPAPAPAPASDFVNLTDLLTVAGPFHTFL 60

Query: 71  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 130
           SYLQSTKVI+TFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLT+DQLKSL+LFHGLPH
Sbjct: 61  SYLQSTKVIDTFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTDDQLKSLILFHGLPH 120

Query: 131 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 190
           +Y+L+EFRNLSLQNPI+T AGGQYSLNFTDVSG+IHIGSGWTNTKVSSSVHSSDPVAVYQ
Sbjct: 121 FYTLSEFRNLSLQNPITTFAGGQYSLNFTDVSGSIHIGSGWTNTKVSSSVHSSDPVAVYQ 180

Query: 191 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 250
           VD++LLPEAIFGTDIPPTPAPAPAPD  IAP AD+PSADSDGK APSS+PKPSSS+RIIN
Sbjct: 181 VDKVLLPEAIFGTDIPPTPAPAPAPD--IAPAADAPSADSDGKTAPSSEPKPSSSNRIIN 240

Query: 251 WGILIHVVLAISCGFLF 268
           WG LIH+VLAIS GFLF
Sbjct: 241 WGSLIHIVLAISGGFLF 255

[Close]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL
Match: A0A6J1GKL2 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111455217 PE=3 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 2.0e-120
Identity = 230/257 (89.49%), Postives = 245/257 (95.33%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFL 70
           ME SMIFTVCSALLLLSSS ADA+TASPP LSP PAPAPA DFVNLTDLLTVAGPFHTFL
Sbjct: 1   MEFSMIFTVCSALLLLSSSSADAQTASPPSLSPAPAPAPASDFVNLTDLLTVAGPFHTFL 60

Query: 71  SYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPH 130
           SYLQSTKVI+TFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLT+DQLKSL+LFHGLPH
Sbjct: 61  SYLQSTKVIDTFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTDDQLKSLILFHGLPH 120

Query: 131 YYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQ 190
           +Y+L+EFRNLSLQNPI+T AGGQYSLNFTDVSG+IHIGSGWTNTKVSSSVHSSDPVAVYQ
Sbjct: 121 FYTLSEFRNLSLQNPITTFAGGQYSLNFTDVSGSIHIGSGWTNTKVSSSVHSSDPVAVYQ 180

Query: 191 VDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIIN 250
           VD++LLPEAIFGTDIPPTPAPAPAPD  IAP AD+PSADSDGK APSS+PKPSSS+RIIN
Sbjct: 181 VDKVLLPEAIFGTDIPPTPAPAPAPD--IAPAADAPSADSDGKTAPSSEPKPSSSNRIIN 240

Query: 251 WGILIHVVLAISCGFLF 268
           WG LIH+VLAIS GFLF
Sbjct: 241 WGSLIHIVLAISGGFLF 255

[Close]

BLAST of CmoCh11G018520.1 vs. TAIR 10
Match: AT2G04780.1 (FASCICLIN-like arabinoogalactan 7 )

HSP 1 Score: 300.1 bits (767), Expect = 1.8e-81
Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 10  RMELSMIFTVCSALLLLSSSPADAKTASP--PLLSPTPAPAPAPDFVNLTDLLTVAGPFH 69
           +M+LS IF    AL++ S+S   AKTASP  P+L PTPAPAPAP+ VNLT+LL+VAGPFH
Sbjct: 3   KMQLS-IFIAVVALIVCSAS---AKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFH 62

Query: 70  TFLSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHG 129
           TFL YL ST VIETFQNQANNTEEG+TIFVPKD AF AQK P LSNLT+DQLK L+LFH 
Sbjct: 63  TFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHA 122

Query: 130 LPHYYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVA 189
           LPHYYSL+EF+NLS   P+ST AGGQYSL FTDVSGT+ I S WT TKVSSSV S+DPVA
Sbjct: 123 LPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVA 182

Query: 190 VYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPS-ADSDGKAAPSSQPKPSSSH 249
           VYQV+R+LLPEAIFGTD+PP PAPAPAP I  AP +DSPS ADS+G ++P S  K S   
Sbjct: 183 VYQVNRVLLPEAIFGTDVPPMPAPAPAP-IVSAP-SDSPSVADSEGASSPKSSHKNSGQK 239

[Close]

BLAST of CmoCh11G018520.1 vs. TAIR 10
Match: AT2G04780.2 (FASCICLIN-like arabinoogalactan 7 )

HSP 1 Score: 300.1 bits (767), Expect = 1.8e-81
Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0


Query: 10  RMELSMIFTVCSALLLLSSSPADAKTASP--PLLSPTPAPAPAPDFVNLTDLLTVAGPFH 69
           +M+LS IF    AL++ S+S   AKTASP  P+L PTPAPAPAP+ VNLT+LL+VAGPFH
Sbjct: 3   KMQLS-IFIAVVALIVCSAS---AKTASPPAPVLPPTPAPAPAPENVNLTELLSVAGPFH 62

Query: 70  TFLSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHG 129
           TFL YL ST VIETFQNQANNTEEG+TIFVPKD AF AQK P LSNLT+DQLK L+LFH 
Sbjct: 63  TFLDYLLSTGVIETFQNQANNTEEGITIFVPKDDAFKAQKNPPLSNLTKDQLKQLVLFHA 122

Query: 130 LPHYYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVA 189
           LPHYYSL+EF+NLS   P+ST AGGQYSL FTDVSGT+ I S WT TKVSSSV S+DPVA
Sbjct: 123 LPHYYSLSEFKNLSQSGPVSTFAGGQYSLKFTDVSGTVRIDSLWTRTKVSSSVFSTDPVA 182

Query: 190 VYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPS-ADSDGKAAPSSQPKPSSSH 249
           VYQV+R+LLPEAIFGTD+PP PAPAPAP I  AP +DSPS ADS+G ++P S  K S   
Sbjct: 183 VYQVNRVLLPEAIFGTDVPPMPAPAPAP-IVSAP-SDSPSVADSEGASSPKSSHKNSGQK 239

[Close]

BLAST of CmoCh11G018520.1 vs. TAIR 10
Match: AT5G60490.1 (FASCICLIN-like arabinogalactan-protein 12 )

HSP 1 Score: 138.7 bits (348), Expect = 7.0e-33
Identity = 95/232 (40.95%), Postives = 135/232 (58.19%), Query Frame = 0


Query: 11  MELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDF-VNLTDLLTVAGPFHTF 70
           ME S+I  + + LLLL+++P         L  P+PA APAP    N+T +L  AG F  F
Sbjct: 1   MEHSLIILLFTVLLLLTTTPG-------ILSQPSPAVAPAPPGPTNVTKILEKAGQFTVF 60

Query: 71  LSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLP 130
           +  L+ST V      Q NN++ G+TIF P DS+F+  K  +L++LT++Q   L+ FH +P
Sbjct: 61  IRLLKSTGVANQLYGQLNNSDNGITIFAPSDSSFTGLKAGTLNSLTDEQQVELIQFHVIP 120

Query: 131 HYYSLAEFRNLSLQNPISTLAG----GQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDP 190
            Y S + F+ +S  NP+ T AG    G + LN T    T++I SG TNT VS +V+S   
Sbjct: 121 SYVSSSNFQTIS--NPLRTQAGDSADGHFPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQ 180

Query: 191 VAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPS 238
           +AVYQVD++LLP+ +F    PP PAPAP+   +     DS S+  D  A  S
Sbjct: 181 LAVYQVDKVLLPQQVFDPR-PPAPAPAPSVSKSKKKKDDSDSSSDDSPADAS 222

[Close]

BLAST of CmoCh11G018520.1 vs. TAIR 10
Match: AT2G20520.1 (FASCICLIN-like arabinogalactan 6 )

HSP 1 Score: 120.6 bits (301), Expect = 2.0e-27
Identity = 83/214 (38.79%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 38  PPLLSPTPAPAPAPDF--VNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQANNTEEGVTI 97
           P + S   APAP  +   +NLT +L     F T +  L +T+V      Q N++++G+TI
Sbjct: 19  PYIQSQPTAPAPTTEKSPINLTAILEAGHQFTTLIQLLNTTQVGFQVSVQLNSSDQGMTI 78

Query: 98  FVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLA----G 157
           F P D+AF+  K  +L++LT  Q   LML+H +P YYSL++   L   NP+ T A    G
Sbjct: 79  FAPTDNAFNKLKPGTLNSLTYQQQIQLMLYHIIPKYYSLSDL--LLASNPVRTQATGQDG 138

Query: 158 GQYSLNFTD--VSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTP 217
           G + LNFT    S  +++ +G   T++++++    P+AVY VD +LLPE +FGT   PT 
Sbjct: 139 GVFGLNFTGQAQSNQVNVSTGVVETRINNALRQQFPLAVYVVDSVLLPEELFGTKTTPTG 198

Query: 218 APAPAPDIAIAPTADSPSADSDGKAAPSSQPKPS 244
           APAP    + +  ADSP+AD + K+A SS  + S
Sbjct: 199 APAPKSSTS-SSDADSPAADDEHKSAGSSVKRTS 229

[Close]

BLAST of CmoCh11G018520.1 vs. TAIR 10
Match: AT5G03170.1 (FASCICLIN-like arabinogalactan-protein 11 )

HSP 1 Score: 111.7 bits (278), Expect = 9.2e-25
Identity = 79/223 (35.43%), Postives = 126/223 (56.50%), Query Frame = 0


Query: 46  APAPAPDF-VNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQAN-NTEEGVTIFVPKDSAF 105
           APAP P    N+T +L  AG F  F+  L+ST+  +    Q N ++  G+T+F P D+AF
Sbjct: 26  APAPGPSGPTNITAILEKAGQFTLFIRLLKSTQASDQINTQLNSSSSNGLTVFAPTDNAF 85

Query: 106 SAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLAG----GQYSLNFT 165
           ++ K  +L++L++ Q   L+ FH LP   ++ +F+ +S  NP+ T AG    G++ LN T
Sbjct: 86  NSLKSGTLNSLSDQQKVQLVQFHVLPTLITMPQFQTVS--NPLRTQAGDGQNGKFPLNIT 145

Query: 166 DVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAI 225
                ++I +G  +  V++SV+S   +AVYQVD++LLP A+FG+ +    APAPAP+   
Sbjct: 146 SSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAMFGSSV----APAPAPEKGG 205

Query: 226 APTADSPSADSDGKAAPSSQPKPSSSHRIINWGILIHVVLAIS 263
           + +  S S   DG  +  S     +      +GI I  V AI+
Sbjct: 206 SVSKGSASGGDDGGDSTDSSDAERTG---FGFGIRITTVAAIA 239

The following BLAST results are available for this feature:

BLAST of CmoCh11G018520.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SJ81	2.6e-80	69.96	Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana OX=3702 GN=FLA7...	[more]
Q8LEE9	9.9e-32	40.95	Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
Q9SIL7	2.8e-26	38.79	Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6...	[more]
Q8LEJ6	1.3e-23	35.43	Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA...	[more]
Q9ZWA8	4.9e-23	35.04	Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9...	[more]

BLAST of CmoCh11G018520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EXB2	1.0e-135	100.00	fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1JME9	7.9e-133	97.67	fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1C1K1	1.3e-122	90.66	fasciclin-like arabinogalactan protein 7 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I0D1	2.0e-120	89.49	fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC11146...	[more]
A0A6J1GKL2	2.0e-120	89.49	fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CmoCh11G018520.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04780.1	1.8e-81	69.96	FASCICLIN-like arabinoogalactan 7	[more]
AT2G04780.2	1.8e-81	69.96	FASCICLIN-like arabinoogalactan 7	[more]
AT5G60490.1	7.0e-33	40.95	FASCICLIN-like arabinogalactan-protein 12	[more]
AT2G20520.1	2.0e-27	38.79	FASCICLIN-like arabinogalactan 6	[more]
AT5G03170.1	9.2e-25	35.43	FASCICLIN-like arabinogalactan-protein 11	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000782	FAS1 domain	SMART	SM00554	fasc_3	coord: 94..198 e-value: 4.2E-22 score: 89.4
IPR000782	FAS1 domain	PFAM	PF02469	Fasciclin	coord: 66..197 e-value: 1.1E-20 score: 74.1
IPR000782	FAS1 domain	PROSITE	PS50213	FAS1	coord: 53..195 score: 19.081652
IPR036378	FAS1 domain superfamily	GENE3D	2.30.180.10	FAS1 domain	coord: 41..198 e-value: 3.3E-16 score: 61.9
IPR036378	FAS1 domain superfamily	SUPERFAMILY	82153	FAS1 domain	coord: 47..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 231..245
None	No IPR available	PANTHER	PTHR32077:SF70	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 7	coord: 12..265
IPR045003	Fasciclin-like arabinogalactan protein, group A	PANTHER	PTHR32077	FASCICLIN-LIKE ARABINOGALACTAN PROTEIN	coord: 12..265

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh11G018520	CmoCh11G018520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018520.1:exon:9345	CmoCh11G018520.1:exon:9345	exon
CmoCh11G018520.1:exon:9346	CmoCh11G018520.1:exon:9346	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018520.1:cds	CmoCh11G018520.1:cds	CDS
CmoCh11G018520.1:cds	CmoCh11G018520.1:cds_2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018520.1:three_prime_utr	CmoCh11G018520.1:three_prime_utr	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh11G018520.1	CmoCh11G018520.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009834	plant-type secondary cell wall biogenesis
cellular_component	GO:0005886	plasma membrane