CmoCh11G018520 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTACCCTACATGCCCAAGTTCTTAAGGAAATGCCTTTCAAATAAAGTATGGTTTTTTATTTTATGTCTCAAGGAAGATCCCAGCTCTTTGTTCATCACCCAATTACTCTCTCTTCTTCAAACCCACCTCCCCATTTGCTTTTCTCCTTCATTTCCTTTAAATACTTGCTTCGATCTTCATCTCTTTCCCCATTATTTCTCTGTCAGAGCTTCTCTCTTAGCCTGCCTGGTCAGTCTCCTTCTCTCATTGTCTCTGCCTTTTGGCATTGCTAATTTAGGCCTCTTTTGGGTTTGGATTTGCTTGGTTTTGGCTGCTGTAACTTGTGATGGGCTGATCTAGATCTGGGTTTTTCTTACTTTTTTGTTTGGGGTTTTGTTCAGGATTTGAAGGGCTGATGGGACATTTTGAATTGTGTTCTTGTGTTTGTTTGTCTTTGAATTCTGCTGTTTTTGGCTTTGTTTTTCAAGTTATACTGTTTGATTTACTTGTCTGGATCTTTGATTGTGCTGTTTTCTTGTTCTTCTTGCTGGTATGTGTTTGCTCTGTTTTGGCTAGTTAGTGAGCTAGTGAGATCTGGATTTTGAAATTTAAGTCTATAAACCTAACTTTTAATCTTGTTAAATGCTGTTTTGGACTTGTTTAGTGTAGTTCTTGCTGAGATTTGATCCATTTGGGGAATTATACAAGCTTTGGCAATGGATTTTATTGAATTTTTCATGAATGCATATCAACTGTTTGTGAAAATGTCACTGTGAACTTATGAAGCATATCAGTTTGTTTAAGATATAGCTGAGATCCGATGATGGGCAGGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGATTGTGATCAGAAATCCTACCACCCATTTATTACATTAAGAAAAACTATATTGCCCATTTTGTTACGTTATTCATCTAAAGCTTCATTTTTTTTTTCTTCTGAACATATATATATGTTGTTGGATTTGTGCAAGAGGTTTCCTTTTTCGTTCCCTCTCTCCACTGCCAACAGATACGTTACGTATCGTCATCAGACTCATGGTTTTAAAACGCGTTTAGCACTGC ATGCTACCCTACATGCCCAAGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGATTGTGATCAGAAATCCTACCACCCATTTATTACATTAAGAAAAACTATATTGCCCATTTTGTTACGTTATTCATCTAAAGCTTCATTTTTTTTTTCTTCTGAACATATATATATGTTGTTGGATTTGTGCAAGAGGTTTCCTTTTTCGTTCCCTCTCTCCACTGCCAACAGATACGTTACGTATCGTCATCAGACTCATGGTTTTAAAACGCGTTTAGCACTGC ATGCTACCCTACATGCCCAAGTTTTGGAGAATGGAATTGTCCATGATTTTCACTGTTTGTAGTGCATTGTTGCTTCTGAGCTCTTCACCTGCAGATGCCAAAACAGCCAGCCCCCCGTTGCTTAGCCCGACCCCGGCACCGGCGCCAGCCCCGGATTTTGTTAACCTCACAGATCTGCTCACTGTAGCAGGTCCATTTCATACCTTCCTCAGCTACCTCCAGTCTACCAAAGTTATTGAGACCTTCCAAAACCAAGCCAATAACACAGAAGAAGGAGTGACCATCTTTGTCCCGAAAGACAGCGCGTTCTCGGCACAAAAGAAACCGTCTCTCTCGAACCTCACTGAGGATCAGCTCAAGTCTCTTATGCTATTTCATGGCTTGCCACATTACTATTCTCTTGCTGAATTCAGGAACCTCAGCCTGCAGAACCCAATCTCGACGTTAGCGGGTGGACAATACAGTTTGAACTTCACAGACGTTTCAGGGACCATCCACATTGGCTCAGGTTGGACCAACACAAAAGTGAGTAGCAGTGTGCATTCAAGTGATCCTGTTGCAGTTTACCAAGTTGACAGAATTCTGCTGCCTGAGGCGATCTTCGGAACCGATATCCCCCCAACCCCAGCCCCCGCACCAGCTCCCGATATCGCTATCGCTCCCACGGCAGATTCTCCTTCAGCTGACAGTGATGGAAAGGCTGCTCCATCTTCACAACCAAAGCCATCATCTTCCCATAGGATCATCAACTGGGGGATTTTGATTCACGTTGTTTTGGCAATTTCATGTGGATTTTTGTTTTGA MLPYMPKFWRMELSMIFTVCSALLLLSSSPADAKTASPPLLSPTPAPAPAPDFVNLTDLLTVAGPFHTFLSYLQSTKVIETFQNQANNTEEGVTIFVPKDSAFSAQKKPSLSNLTEDQLKSLMLFHGLPHYYSLAEFRNLSLQNPISTLAGGQYSLNFTDVSGTIHIGSGWTNTKVSSSVHSSDPVAVYQVDRILLPEAIFGTDIPPTPAPAPAPDIAIAPTADSPSADSDGKAAPSSQPKPSSSHRIINWGILIHVVLAISCGFLF Homology
BLAST of CmoCh11G018520 vs. ExPASy Swiss-Prot
Match: Q9SJ81 (Fasciclin-like arabinogalactan protein 7 OS=Arabidopsis thaliana OX=3702 GN=FLA7 PE=2 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 2.6e-80 Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy Swiss-Prot
Match: Q8LEE9 (Fasciclin-like arabinogalactan protein 12 OS=Arabidopsis thaliana OX=3702 GN=FLA12 PE=2 SV=2) HSP 1 Score: 138.7 bits (348), Expect = 9.9e-32 Identity = 95/232 (40.95%), Postives = 135/232 (58.19%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy Swiss-Prot
Match: Q9SIL7 (Fasciclin-like arabinogalactan protein 6 OS=Arabidopsis thaliana OX=3702 GN=FLA6 PE=2 SV=2) HSP 1 Score: 120.6 bits (301), Expect = 2.8e-26 Identity = 83/214 (38.79%), Postives = 125/214 (58.41%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy Swiss-Prot
Match: Q8LEJ6 (Fasciclin-like arabinogalactan protein 11 OS=Arabidopsis thaliana OX=3702 GN=FLA11 PE=2 SV=2) HSP 1 Score: 111.7 bits (278), Expect = 1.3e-23 Identity = 79/223 (35.43%), Postives = 126/223 (56.50%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy Swiss-Prot
Match: Q9ZWA8 (Fasciclin-like arabinogalactan protein 9 OS=Arabidopsis thaliana OX=3702 GN=FLA9 PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 4.9e-23 Identity = 89/254 (35.04%), Postives = 130/254 (51.18%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy TrEMBL
Match: A0A6J1EXB2 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111437019 PE=3 SV=1) HSP 1 Score: 492.7 bits (1267), Expect = 1.0e-135 Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy TrEMBL
Match: A0A6J1JME9 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC111486507 PE=3 SV=1) HSP 1 Score: 483.0 bits (1242), Expect = 7.9e-133 Identity = 251/257 (97.67%), Postives = 255/257 (99.22%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy TrEMBL
Match: A0A6J1C1K1 (fasciclin-like arabinogalactan protein 7 OS=Momordica charantia OX=3673 GN=LOC111007542 PE=3 SV=1) HSP 1 Score: 449.1 bits (1154), Expect = 1.3e-122 Identity = 233/257 (90.66%), Postives = 245/257 (95.33%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy TrEMBL
Match: A0A6J1I0D1 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita maxima OX=3661 GN=LOC111468289 PE=3 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 2.0e-120 Identity = 230/257 (89.49%), Postives = 245/257 (95.33%), Query Frame = 0
BLAST of CmoCh11G018520 vs. ExPASy TrEMBL
Match: A0A6J1GKL2 (fasciclin-like arabinogalactan protein 7 OS=Cucurbita moschata OX=3662 GN=LOC111455217 PE=3 SV=1) HSP 1 Score: 441.8 bits (1135), Expect = 2.0e-120 Identity = 230/257 (89.49%), Postives = 245/257 (95.33%), Query Frame = 0
BLAST of CmoCh11G018520 vs. TAIR 10
Match: AT2G04780.1 (FASCICLIN-like arabinoogalactan 7 ) HSP 1 Score: 300.1 bits (767), Expect = 1.8e-81 Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0
BLAST of CmoCh11G018520 vs. TAIR 10
Match: AT2G04780.2 (FASCICLIN-like arabinoogalactan 7 ) HSP 1 Score: 300.1 bits (767), Expect = 1.8e-81 Identity = 170/243 (69.96%), Postives = 196/243 (80.66%), Query Frame = 0
BLAST of CmoCh11G018520 vs. TAIR 10
Match: AT5G60490.1 (FASCICLIN-like arabinogalactan-protein 12 ) HSP 1 Score: 138.7 bits (348), Expect = 7.0e-33 Identity = 95/232 (40.95%), Postives = 135/232 (58.19%), Query Frame = 0
BLAST of CmoCh11G018520 vs. TAIR 10
Match: AT2G20520.1 (FASCICLIN-like arabinogalactan 6 ) HSP 1 Score: 120.6 bits (301), Expect = 2.0e-27 Identity = 83/214 (38.79%), Postives = 125/214 (58.41%), Query Frame = 0
BLAST of CmoCh11G018520 vs. TAIR 10
Match: AT5G03170.1 (FASCICLIN-like arabinogalactan-protein 11 ) HSP 1 Score: 111.7 bits (278), Expect = 9.2e-25 Identity = 79/223 (35.43%), Postives = 126/223 (56.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|