MELO3C028461 (gene) Melon (DHL92) v4

Overview


Name	MELO3C028461
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Beta-galactosidase
Location	chr04: 3362792 .. 3363176 (+)
RNA-Seq Expression	MELO3C028461
Synteny	MELO3C028461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACTGTACACAATATGCTAAACTTGAAGAGGCTGACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTTGATAATGTTTGTGGTCGTATACTCGGACAAAGACCTCTTCCCTCCCTAATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACCATTGACTCTGCTGCCTTTAGCGCTCGGTTCTCAAATCATGACAGTGACAAGAATAATGGGAAGTCAATTCCTGCGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATTAGTGTTGGAAACTCCACGGTCGTCCCTCAGGAGGTAAGA

mRNA sequence

ATGCATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACTGTACACAATATGCTAAACTTGAAGAGGCTGACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTTGATAATGTTTGTGGTCGTATACTCGGACAAAGACCTCTTCCCTCCCTAATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACCATTGACTCTGCTGCCTTTAGCGCTCGGTTCTCAAATCATGACAGTGACAAGAATAATGGGAAGTCAATTCCTGCGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATTAGTGTTGGAAACTCCACGGTCGTCCCTCAGGAGGTAAGA

Coding sequence (CDS)

ATGCATTTGTGCAGAGAGATAGTTTGGGACACACCAAATGACTGTACACAATATGCTAAACTTGAAGAGGCTGACCGTGTTTATGACTTCCTTGCAGGACTTAATCCCAAATTTGATAATGTTTGTGGTCGTATACTCGGACAAAGACCTCTTCCCTCCCTAATGGAAGTTTGTTTTGAAGTCCGCCTGGAAGAGGATCGCACTAATGCCATGGGTGTATTGACTACCCCTACCATTGACTCTGCTGCCTTTAGCGCTCGGTTCTCAAATCATGACAGTGACAAGAATAATGGGAAGTCAATTCCTGCGTGTGAGCACTGCAAGAAACAATGGCACACCAAGGATTAG

Protein sequence

MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFEVRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD

Homology

[Close]

BLAST of MELO3C028461 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 8.8e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. NCBI nr
Match: KAA0031941.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 8.8e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 8.8e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. NCBI nr
Match: KAA0048203.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 8.8e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. NCBI nr
Match: KAA0025363.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 8.8e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 326 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 385

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 386 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 440

[Close]

BLAST of MELO3C028461 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. ExPASy TrEMBL
Match: A0A5A7VLQ7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00690 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

[Close]

BLAST of MELO3C028461 vs. ExPASy TrEMBL
Match: A0A5A7UI74 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2256G00180 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 1   MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 115

[Close]

BLAST of MELO3C028461 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 4.2e-59
Identity = 110/115 (95.65%), Postives = 110/115 (95.65%), Query Frame = 0


Query: 1   MHLCREIVWDTPNDCTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 60
           M LCRE VWDTPND TQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE
Sbjct: 294 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 353

Query: 61  VRLEEDRTNAMGVLTTPTIDSAAFSARFSNHDSDKNNGKSIPACEHCKKQWHTKD 116
           VRLEEDRTNAMGVLTTPTIDSAAFSAR SNHDSDKNNGKSIP CEHCKKQWHTKD
Sbjct: 354 VRLEEDRTNAMGVLTTPTIDSAAFSARSSNHDSDKNNGKSIPVCEHCKKQWHTKD 408

The following BLAST results are available for this feature:

BLAST of MELO3C028461 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99952.1	8.8e-59	95.65	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
KAA0031941.1	8.8e-59	95.65	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK08054.1	8.8e-59	95.65	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0048203.1	8.8e-59	95.65	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0025363.1	8.8e-59	95.65	Beta-galactosidase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C028461 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C028461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	4.2e-59	95.65	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	4.2e-59	95.65	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7VLQ7	4.2e-59	95.65	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G0...	[more]
A0A5A7UI74	4.2e-59	95.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SM64	4.2e-59	95.65	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]

BLAST of MELO3C028461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222:SF37	SUBFAMILY NOT NAMED	coord: 6..115
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 6..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C028461.1	MELO3C028461.1	mRNA