HG10013370 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10013370
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Retrotransposon-derived protein PEG10, putative
Location	Chr02: 827282 .. 827701 (+)
RNA-Seq Expression	HG10013370
Synteny	HG10013370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGTAGAGGCGGAATCCAGAGACGAAGCAATGAGATCCAAAACCACCGTTCGATGTGCGAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCATCTCAGAGCCACTGTCGATGAACAAGCCAAGGTTCTCAATTACAACTTATTATCAGTACCTGCCCTAGCTTGTGGATAGCGTTCTGGTTTATTTGATTCGCGATTTTGAAAAATTAAAACGTCAATTACCTTTCAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGCTAGGGAGCATCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

mRNA sequence

ATGGAGAAAGTAGAGGCGGAATCCAGAGACGAAGCAATGAGATCCAAAACCACCGTTCGATGTGCGAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCATCTCAGAGCCACTGTCGATGAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGCTAGGGAGCATCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Coding sequence (CDS)

ATGGAGAAAGTAGAGGCGGAATCCAGAGACGAAGCAATGAGATCCAAAACCACCGTTCGATGTGCGAAAGCAGCTTTTCTTCTTTCTTCGCTCAAATCCTCCCAAAATCGCCATCTCAGAGCCACTGTCGATGAACAAGCCAAGGAGAAAGAGATGCTGAGGAAAGCTGTGGGAGATTTGAAGATCGAGTTGGCTAGGGAGCATCTGAGGAATAAGAGGATCAAACTCTGCGGTTTGATGGAATTTGTTCTTCAGCTTCTGCTGGTTATCTCTCTTTCGAGCTTCTTCCTTTTTGTTGCCTTCAAATTTGTCTGA

Protein sequence

MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDLKIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV

Homology

[Close]

BLAST of HG10013370 vs. NCBI nr
Match: XP_022940284.1 (uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 uncharacterized protein LOC111788615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 1.2e-33
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDL 60
           ME VEAESRDEAMRSKT  RCAKAAFL+SS KS QNR+LRA+VDEQAKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV 105
           KIELA E  RNKRIKLCGLMEFVLQLLLVISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of HG10013370 vs. NCBI nr
Match: KAA0038606.1 (putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31205.1 putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa])

HSP 1 Score: 152.9 bits (385), Expect = 1.5e-33
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MEKVEAESRDEAMR-SKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGD 60
           ME VEAES+DEAMR SKT +RCAKAAFLLSSLKSSQNR LRAT  EQAKE++MLRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV 105
           LKI+LARE LRNKRIKLCGLMEFVLQLLLVISLSS  LFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]

BLAST of HG10013370 vs. NCBI nr
Match: KAG7031715.1 (hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 5.7e-33
Identity = 86/104 (82.69%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDL 60
           ME VEAESRDEAMRSKT  RCAKAAFL+SS KS QNR+LRA+VDE+AKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSLQNRNLRASVDEEAKEKERLRKVVGDL 60

Query: 61  KIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV 105
           KIELA E  RN+RIKLCGLMEFVLQLLLVISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNRRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of HG10013370 vs. NCBI nr
Match: XP_022138206.1 (uncharacterized protein LOC111009432 [Momordica charantia])

HSP 1 Score: 150.6 bits (379), Expect = 7.5e-33
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDL 60
           MEKVEAESRDEAMRS+T  RCAKAAF+LSSLKSSQN +LRATV E  KEKE LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFK 103
           K+ELARE LRNKRIKLCGLMEFVLQ+LLVI+LSSFF F+AFK
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]

BLAST of HG10013370 vs. NCBI nr
Match: XP_011652624.1 (uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical protein Csa_001987 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.0e-31
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MEKVEAESRDEAMR-SKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGD 60
           ME VEAE+++EAMR SKT +RCAKAAFLLSSLKSSQNR LRATV EQAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAF 102
           LKI+LARE +RNKRIKLCGLMEFVLQLLLV+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of HG10013370 vs. ExPASy TrEMBL
Match: A0A6J1FJM5 (uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC111445952 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 88/104 (84.62%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 1   MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDL 60
           ME VEAESRDEAMRSKT  RCAKAAFL+SS KS QNR+LRA+VDEQAKEKE LRK VGDL
Sbjct: 1   MEGVEAESRDEAMRSKTAFRCAKAAFLISSFKSFQNRNLRASVDEQAKEKERLRKVVGDL 60

Query: 61  KIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV 105
           KIELA E  RNKRIKLCGLMEFVLQLLLVISLSSFFLF+AFK +
Sbjct: 61  KIELAMERRRNKRIKLCGLMEFVLQLLLVISLSSFFLFIAFKSI 104

[Close]

BLAST of HG10013370 vs. ExPASy TrEMBL
Match: A0A5D3E7E0 (Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004900 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.3e-34
Identity = 90/105 (85.71%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MEKVEAESRDEAMR-SKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGD 60
           ME VEAES+DEAMR SKT +RCAKAAFLLSSLKSSQNR LRAT  EQAKE++MLRK VGD
Sbjct: 1   MENVEAESKDEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATAHEQAKERKMLRKTVGD 60

Query: 61  LKIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFKFV 105
           LKI+LARE LRNKRIKLCGLMEFVLQLLLVISLSS  LFVAFKFV
Sbjct: 61  LKIQLARERLRNKRIKLCGLMEFVLQLLLVISLSSLSLFVAFKFV 105

[Close]

BLAST of HG10013370 vs. ExPASy TrEMBL
Match: A0A6J1C920 (uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009432 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.6e-33
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MEKVEAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDL 60
           MEKVEAESRDEAMRS+T  RCAKAAF+LSSLKSSQN +LRATV E  KEKE LRK +GDL
Sbjct: 1   MEKVEAESRDEAMRSRTAFRCAKAAFVLSSLKSSQNHYLRATVYEIVKEKEKLRKTLGDL 60

Query: 61  KIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAFK 103
           K+ELARE LRNKRIKLCGLMEFVLQ+LLVI+LSSFF F+AFK
Sbjct: 61  KVELARERLRNKRIKLCGLMEFVLQILLVITLSSFFFFIAFK 102

[Close]

BLAST of HG10013370 vs. ExPASy TrEMBL
Match: A0A0A0LJY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 84/102 (82.35%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MEKVEAESRDEAMR-SKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGD 60
           ME VEAE+++EAMR SKT +RCAKAAFLLSSLKSSQNR LRATV EQAKEK+ML K VGD
Sbjct: 1   MEDVEAETKNEAMRGSKTAIRCAKAAFLLSSLKSSQNRQLRATVHEQAKEKKMLGKTVGD 60

Query: 61  LKIELAREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVAF 102
           LKI+LARE +RNKRIKLCGLMEFVLQLLLV+SLSS FLF AF
Sbjct: 61  LKIQLARERVRNKRIKLCGLMEFVLQLLLVLSLSSLFLFAAF 102

[Close]

BLAST of HG10013370 vs. ExPASy TrEMBL
Match: A0A5N6R7K9 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013632 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.3e-19
Identity = 53/96 (55.21%), Postives = 81/96 (84.38%), Query Frame = 0


Query: 5   EAESRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDEQAKEKEMLRKAVGDLKIEL 64
           + E+ D+A++SK  VRCAKAAFLLS+LKSS NR++ +T ++Q +E E++R+ +G+LK+EL
Sbjct: 8   DTEAMDDALKSKIVVRCAKAAFLLSALKSSPNRYVNSTTEDQHEEVELMRREIGELKMEL 67

Query: 65  AREHLRNKRIKLCGLMEFVLQLLLVISLSSFFLFVA 101
           ARE L+N+RIKLCGLME VL++ +V+ +S+FFL ++
Sbjct: 68  ARERLKNRRIKLCGLMEVVLEVAVVLCVSTFFLMLS 103

[Close]

BLAST of HG10013370 vs. TAIR 10
Match: AT1G78172.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 8  SRDEAMRSKTTVRCAKAAFLLSSLKSSQNRHLRATVDE--QAKEKEMLRKAVGDLKIELA 67
          S+DE  R  T +RCA+A  LL SL SS+      T+D   + +EK   R+ + DL+ +L 
Sbjct: 3  SKDEFSRDLTAIRCARATMLLYSLASSR------TIDSAGEKQEKGETRREIEDLRRKLT 62

Query: 68 REHLRNKRIKLCGLMEFVLQLLLVISLSSFFL 98
             ++  RIKLCGLME +L + LV+ LS+FFL
Sbjct: 63 MVKIKMNRIKLCGLMELLLLVFLVLLLSTFFL 88

The following BLAST results are available for this feature:

BLAST of HG10013370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940284.1	1.2e-33	84.62	uncharacterized protein LOC111445952 [Cucurbita moschata] >XP_023524781.1 unchar...	[more]
KAA0038606.1	1.5e-33	85.71	putative Retrotransposon-derived protein PEG10 [Cucumis melo var. makuwa] >TYK31...	[more]
KAG7031715.1	5.7e-33	82.69	hypothetical protein SDJN02_05756, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022138206.1	7.5e-33	82.35	uncharacterized protein LOC111009432 [Momordica charantia]	[more]
XP_011652624.1	7.0e-31	82.35	uncharacterized protein LOC105435036 [Cucumis sativus] >KGN60336.1 hypothetical ...	[more]

BLAST of HG10013370 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10013370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FJM5	5.6e-34	84.62	uncharacterized protein LOC111445952 OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A5D3E7E0	7.3e-34	85.71	Putative Retrotransposon-derived protein PEG10 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1C920	3.6e-33	82.35	uncharacterized protein LOC111009432 OS=Momordica charantia OX=3673 GN=LOC111009...	[more]
A0A0A0LJY1	3.4e-31	82.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G895820 PE=4 SV=1	[more]
A0A5N6R7K9	2.3e-19	55.21	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_013632 PE=4 SV=1	[more]

BLAST of HG10013370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G78172.1	3.6e-09	43.48	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10013370.1	HG10013370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane