Moc09g00630 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g00630
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CLAVATA3/ESR (CLE)-related protein 44
Location	chr9: 635732 .. 636067 (+)
RNA-Seq Expression	Moc09g00630
Synteny	Moc09g00630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTGCTCCAAAACCATCTTCATCCCACTTTCTCACTCCTAAATCCATTCTCTTTCTCTCTCTCCTCCTCTCCTCCCTCCTCCTTCTAACCCTCATTTCAACCCCTCCCTCCATGGCGGCCACCAACCATAGGATTCTTTCCGCTACCGTCTCCACCGCCACCGCCACGTCCTTCCACCCGACGCAATCTCGACGCCGTAATTCTCCAGCCACCGCCGGAGAATTCGGAGCTGAAGCCCATGAAGTTCCCAGCGGTCCAAACCCCATATCCAACTAA

mRNA sequence

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTGCTCCAAAACCATCTTCATCCCACTTTCTCACTCCTAAATCCATTCTCTTTCTCTCTCTCCTCCTCTCCTCCCTCCTCCTTCTAACCCTCATTTCAACCCCTCCCTCCATGGCGGCCACCAACCATAGGATTCTTTCCGCTACCGTCTCCACCGCCACCGCCACGTCCTTCCACCCGACGCAATCTCGACGCCGTAATTCTCCAGCCACCGCCGGAGAATTCGGAGCTGAAGCCCATGAAGTTCCCAGCGGTCCAAACCCCATATCCAACTAA

Coding sequence (CDS)

ATGGATATTGAACCCTTGTGGGGTGTTGGGGGGTGGTTTCTTGTCTTAAATTGCATGGCAGCTGCTCCAAAACCATCTTCATCCCACTTTCTCACTCCTAAATCCATTCTCTTTCTCTCTCTCCTCCTCTCCTCCCTCCTCCTTCTAACCCTCATTTCAACCCCTCCCTCCATGGCGGCCACCAACCATAGGATTCTTTCCGCTACCGTCTCCACCGCCACCGCCACGTCCTTCCACCCGACGCAATCTCGACGCCGTAATTCTCCAGCCACCGCCGGAGAATTCGGAGCTGAAGCCCATGAAGTTCCCAGCGGTCCAAACCCCATATCCAACTAA

Protein sequence

MDIEPLWGVGGWFLVLNCMAAAPKPSSSHFLTPKSILFLSLLLSSLLLLTLISTPPSMAATNHRILSATVSTATATSFHPTQSRRRNSPATAGEFGAEAHEVPSGPNPISN

Homology

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BLAST of Moc09g00630 vs. NCBI nr
Match: KAE8646241.1 (hypothetical protein Csa_015939 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-25
Identity = 78/115 (67.83%), Postives = 89/115 (77.39%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMA-AAPKPSSSHFLTPKSILFLSLLLSSLLLLTLISTPPSMA 60
           MDIEPLWGVGGWF  LNCMA A+ K SSSHF     +LFLSL  S LLLLTLIS+PPSMA
Sbjct: 1   MDIEPLWGVGGWFFFLNCMATASQKQSSSHFF----VLFLSLFFSFLLLLTLISSPPSMA 60

Query: 61  A-TNHRILSATVSTATATSFHPTQSR-RRNSPAT-AGEFGAEAHEVPSGPNPISN 112
           +  +HR+LS     A++T+FHP +SR R  SPAT  G+FGAEAHEVPSGPNPISN
Sbjct: 61  SDRHHRLLS-----ASSTAFHPKKSRPRTTSPATVVGQFGAEAHEVPSGPNPISN 106

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BLAST of Moc09g00630 vs. NCBI nr
Match: XP_011458193.1 (PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 95.5 bits (236), Expect = 3.0e-16
Identity = 64/123 (52.03%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPKPSSSHFLTPKSILFLSLLLSSLL---LLTLISTP-- 60
           MDIEPLW +GGWFL  NCMA+APK  S    TP + L  +L+LS  L   LL L++TP  
Sbjct: 1   MDIEPLWALGGWFLFPNCMASAPKSISESHTTPATKLHPALILSLTLVFALLLLLATPLS 60

Query: 61  -PSMAATNHRILSATVSTATATSFHP--TQSRRRNSPATA----GEFGAEAHEVPSGPNP 112
            PS  AT  R+L A  +T T T+  P  TQ+  + + +T+     EFGAEAHEVPSGPNP
Sbjct: 61  NPSSMATK-RLLLADTTTTTTTNLQPKETQNSHKGTSSTSTRARSEFGAEAHEVPSGPNP 120

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BLAST of Moc09g00630 vs. NCBI nr
Match: XP_024165976.1 (CLAVATA3/ESR (CLE)-related protein 41 [Rosa chinensis] >PRQ25562.1 hypothetical protein RchiOBHm_Chr6g0285001 [Rosa chinensis])

HSP 1 Score: 95.1 bits (235), Expect = 4.0e-16
Identity = 60/121 (49.59%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPKP-SSSHFLTPK---SILFLSLLLSSLLLLTLISTPP 60
           MDIEPLW +GGWFL+ NCMA+APK  S SH  + K    IL L+++   LLL+T +S P 
Sbjct: 1   MDIEPLWALGGWFLLPNCMASAPKSISESHTTSTKLHPLILSLTVVFILLLLVTPLSNPS 60

Query: 61  SMAATNHRILSATVSTATATSFHPTQSRRRNSPATA------GEFGAEAHEVPSGPNPIS 112
           SMA  + R+L A  +T T T+  P +++  ++  ++       EFGAEAHEVPSGPNPIS
Sbjct: 61  SMA--SKRLLLADTTTTTTTNLQPKKAKNSHTSTSSTSTRARSEFGAEAHEVPSGPNPIS 119

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BLAST of Moc09g00630 vs. NCBI nr
Match: KAB2602106.1 (CLAVATA3/ESR (CLE)-related protein 44 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 94.7 bits (234), Expect = 5.2e-16
Identity = 66/135 (48.89%), Postives = 83/135 (61.48%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSPSPSSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  TLISTPPSMAA-------TNHRILSATVSTATATSFH------PTQSRRRNSPATAGEFG 112
               +P SMA+       T+ R+LS  +S +T T+FH      PT +   ++P+   +FG
Sbjct: 61  V---SPSSMASSSSTSPITSKRLLSEPLSKST-TNFHPKNTQNPTTTSSSSNPSARRDFG 120

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BLAST of Moc09g00630 vs. NCBI nr
Match: TQE12464.1 (hypothetical protein C1H46_002117 [Malus baccata])

HSP 1 Score: 94.0 bits (232), Expect = 8.9e-16
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSSSPPSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  ----TLISTPPSMAATNHRILSATVSTATATSFH------PTQSRRRNSPATAGEFGAEA 112
               ++ S+  +   T+ R+LS   S +T T+FH      PT +   ++P+   EFGAEA
Sbjct: 61  VSPSSMASSSSASPVTSKRLLSEPSSKST-TNFHPKNTKNPTTTTSSSNPSARREFGAEA 120

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BLAST of Moc09g00630 vs. ExPASy Swiss-Prot
Match: A1EC31 (CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-11
Identity = 54/131 (41.22%), Postives = 68/131 (51.91%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVL------NCMAAAPKPSS-SHFLTPKSI--LFLSLLLSSLLLLTL 60
           MDI+ LW  GGWF +L       CMA     S  SHF  P+S   LF   LL   +L+T+
Sbjct: 1   MDIDLLWSFGGWFFILFPETINYCMAKLRSTSQISHFTNPRSCSSLFFVALLIITILITM 60

Query: 61  ISTPPSMAAT----------NHRILSATVSTATATS-FHPTQSRRRNSPATAGEFGAEAH 112
           + +  SM  T          N    S+T STAT T+  HP ++  ++ P     F A AH
Sbjct: 61  LQSSTSMEVTSLPTHQPTSSNSHDESSTSSTATTTTDLHPKRTHHQSHPKPTRSFEAGAH 120

[Close]

BLAST of Moc09g00630 vs. ExPASy TrEMBL
Match: A0A2P6PUF9 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0285001 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 60/121 (49.59%), Postives = 80/121 (66.12%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPKP-SSSHFLTPK---SILFLSLLLSSLLLLTLISTPP 60
           MDIEPLW +GGWFL+ NCMA+APK  S SH  + K    IL L+++   LLL+T +S P 
Sbjct: 1   MDIEPLWALGGWFLLPNCMASAPKSISESHTTSTKLHPLILSLTVVFILLLLVTPLSNPS 60

Query: 61  SMAATNHRILSATVSTATATSFHPTQSRRRNSPATA------GEFGAEAHEVPSGPNPIS 112
           SMA  + R+L A  +T T T+  P +++  ++  ++       EFGAEAHEVPSGPNPIS
Sbjct: 61  SMA--SKRLLLADTTTTTTTNLQPKKAKNSHTSTSSTSTRARSEFGAEAHEVPSGPNPIS 119

[Close]

BLAST of Moc09g00630 vs. ExPASy TrEMBL
Match: A0A5N5FG68 (CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_003111 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 66/135 (48.89%), Postives = 83/135 (61.48%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSPSPSSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  TLISTPPSMAA-------TNHRILSATVSTATATSFH------PTQSRRRNSPATAGEFG 112
               +P SMA+       T+ R+LS  +S +T T+FH      PT +   ++P+   +FG
Sbjct: 61  V---SPSSMASSSSTSPITSKRLLSEPLSKST-TNFHPKNTQNPTTTSSSSNPSARRDFG 120

[Close]

BLAST of Moc09g00630 vs. ExPASy TrEMBL
Match: A0A540NN59 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_002117 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.3e-16
Identity = 64/132 (48.48%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSSSPPSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  ----TLISTPPSMAATNHRILSATVSTATATSFH------PTQSRRRNSPATAGEFGAEA 112
               ++ S+  +   T+ R+LS   S +T T+FH      PT +   ++P+   EFGAEA
Sbjct: 61  VSPSSMASSSSASPVTSKRLLSEPSSKST-TNFHPKNTKNPTTTTSSSNPSARREFGAEA 120

[Close]

BLAST of Moc09g00630 vs. ExPASy TrEMBL
Match: A0A5N5HBE2 (CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_038355 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.6e-16
Identity = 63/132 (47.73%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSPSPSSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  ----TLISTPPSMAATNHRILSATVSTATATSFH------PTQSRRRNSPATAGEFGAEA 112
               ++ S+  +   T+ R+LS  +S +T T+FH      PT     ++P+   +FGAEA
Sbjct: 61  VSPSSMTSSSSTSPITSKRLLSEPLSKST-TNFHPKNTQNPTTRSSSSNPSARRDFGAEA 120

[Close]

BLAST of Moc09g00630 vs. ExPASy TrEMBL
Match: A0A5N5INL0 (CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_027078 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.6e-15
Identity = 66/136 (48.53%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 1   MDIEPLWGVGGWFLVLNCMAAAPK--------PSSSHFLT---PKSILFLSLLLSSLLLL 60
           MDIEPLW +GGWFL+ NCMAAAPK        PS S F T   P  +LFL+L+    LLL
Sbjct: 1   MDIEPLWALGGWFLLPNCMAAAPKTSSSPPSSPSISEFPTKVNPNLLLFLALVFFIFLLL 60

Query: 61  TLISTPPSMAA--------TNHRILSATVSTATATSFH------PTQSRRRNSPATAGEF 112
               +P SMA+        T+ R+LS   S +T  +FH      PT +   ++P+   EF
Sbjct: 61  V---SPSSMASSSSSASPITSKRLLSEPSSKST-INFHPKNTKNPTTTTSSSNPSARREF 120

[Close]

BLAST of Moc09g00630 vs. TAIR 10
Match: AT3G24770.1 (CLAVATA3/ESR-RELATED 41 )

HSP 1 Score: 43.9 bits (102), Expect = 9.8e-05
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 37  LFLSLLL-SSLLLLTLISTPPSMAATNHRI-LSATVSTATATSFHPTQSRRRNSPATAGE 96
           +FLSLLL SSL +        SM A   R+ L ++V  ++     P  S RR+  +   E
Sbjct: 23  IFLSLLLFSSLTIPMTRHQSTSMVAPFKRVLLESSVPASSTMDLRPKASTRRSRTSRRRE 82

Query: 97  FGAEAHEVPSGPNPISN 112
           FG +AHEVPSGPNPISN
Sbjct: 83  FGNDAHEVPSGPNPISN 99

The following BLAST results are available for this feature:

BLAST of Moc09g00630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646241.1	2.1e-25	67.83	hypothetical protein Csa_015939 [Cucumis sativus]	[more]
XP_011458193.1	3.0e-16	52.03	PREDICTED: CLAVATA3/ESR (CLE)-related protein TDIF-like [Fragaria vesca subsp. v...	[more]
XP_024165976.1	4.0e-16	49.59	CLAVATA3/ESR (CLE)-related protein 41 [Rosa chinensis] >PRQ25562.1 hypothetical ...	[more]
KAB2602106.1	5.2e-16	48.89	CLAVATA3/ESR (CLE)-related protein 44 [Pyrus ussuriensis x Pyrus communis]	[more]
TQE12464.1	8.9e-16	48.48	hypothetical protein C1H46_002117 [Malus baccata]	[more]

BLAST of Moc09g00630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1EC31	1.1e-11	41.22	CLAVATA3/ESR (CLE)-related protein TDIF OS=Zinnia violacea OX=34245 GN=TDIF PE=1...	[more]

BLAST of Moc09g00630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P6PUF9	1.9e-16	49.59	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0285001 PE=4...	[more]
A0A5N5FG68	2.5e-16	48.89	CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2...	[more]
A0A540NN59	4.3e-16	48.48	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_002117 PE=4 SV=1	[more]
A0A5N5HBE2	9.6e-16	47.73	CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2...	[more]
A0A5N5INL0	1.6e-15	48.53	CLAVATA3/ESR (CLE)-related protein 44 OS=Pyrus ussuriensis x Pyrus communis OX=2...	[more]

BLAST of Moc09g00630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24770.1	9.8e-05	45.45	CLAVATA3/ESR-RELATED 41	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..89
None	No IPR available	PANTHER	PTHR35301:SF2	SUBFAMILY NOT NAMED	coord: 1..111
IPR037495	CLAVATA3/ESR (CLE)-related protein 41/42/44	PANTHER	PTHR35301	CLAVATA3/ESR (CLE)-RELATED PROTEIN 41-RELATED	coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g00630.1	Moc09g00630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010089	xylem development
biological_process	GO:0010087	phloem or xylem histogenesis
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0033612	receptor serine/threonine kinase binding