Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA
mRNA sequence
ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA
Coding sequence (CDS)
ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA
Protein sequence
MFVQILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCGCADGQAVLLAHDRGMAMVSKCFGNGGSLLPFAFDF
Homology
BLAST of Lag0038223 vs. NCBI nr
Match:
XP_038903290.1 (E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida])
HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 4 QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
QI KAAL +L CPWGRNRVK + + G+ + + A ERRVC+M L A+ L
Sbjct: 243 QIFKAALGILIAVCPWGRNRVKAVEAGGVGV------LVEILLATPERRVCEMTLMAMDL 302
Query: 64 LCGCADGQAVLLAHDRGMAMVSK 87
LCGCA+G+A LL H GMA+VSK
Sbjct: 303 LCGCAEGRAALLGHGGGMAVVSK 319
BLAST of Lag0038223 vs. NCBI nr
Match:
KAG7028156.1 (E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 4 QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
Q LKAAL +L AC WGRN+VK + + G+ + + ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305
Query: 64 LCGCADGQAVLLAHDRGMAMVSK 87
LCGCA+G+A LL H GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322
BLAST of Lag0038223 vs. NCBI nr
Match:
KAG8371113.1 (hypothetical protein BUALT_Bualt13G0053000 [Buddleja alternifolia])
HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 4 QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
Q KAALK+L CPWGRNR+K + + +++ + +A+RR C++ LT + L
Sbjct: 240 QATKAALKLLMELCPWGRNRIKAVENGAVFVLIE----LLLDQTSADRRACELILTVLDL 299
Query: 64 LCGCADGQAVLLAHDRGMAMVSK 87
LCGCADG+A LL H G+A+VSK
Sbjct: 300 LCGCADGRAELLRHGAGLAVVSK 318
BLAST of Lag0038223 vs. NCBI nr
Match:
XP_023005635.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita maxima])
HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 4 QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
Q LKAAL +L AC WGRN+VK + + G+ + + ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305
Query: 64 LCGCADGQAVLLAHDRGMAMVSK 87
LCGCA+G+A LL H GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322
BLAST of Lag0038223 vs. NCBI nr
Match:
XP_022952378.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita moschata])
HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0
Query: 4 QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
Q LKAAL +L AC WGRN+VK + + G+ + + ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305
Query: 64 LCGCADGQAVLLAHDRGMAMVSK 87
LCGCA+G+A LL H GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322
BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match:
Q9SVC6 (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1)
HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 27/80 (33.75%), Postives = 48/80 (60.00%), Query Frame = 0
Query: 7 KAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCG 66
++A+++L + CPWGRNR K + + + + + ++ERR +MA+ + +LC
Sbjct: 274 RSAMQILVITCPWGRNRHKAVEGGTISMIIE---LLMDDTFSSERRNSEMAMVVLDMLCQ 333
Query: 67 CADGQAVLLAHDRGMAMVSK 87
CA+G+A L H +A+VSK
Sbjct: 334 CAEGRAEFLNHGAAIAVVSK 350
BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match:
Q84TG3 (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1)
HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0
Query: 7 KAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCG 66
KAA+ +L CPWGRNR K + + + + + + + +ERR +MA+ + LLC
Sbjct: 250 KAAMHILVNICPWGRNRHKAVEAGVISVIIE---LLMDESFTSERRGPEMAMVVLDLLCQ 309
Query: 67 CADGQAVLLAHDRGMAMVSK 87
CA+G+A L H +A+V K
Sbjct: 310 CAEGRAEFLNHGAAIAVVCK 326
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_038903290.1 | 3.2e-12 | 51.81 | E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida] | [more] |
| KAG7028156.1 | 3.0e-10 | 50.60 | E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| KAG8371113.1 | 3.0e-10 | 45.78 | hypothetical protein BUALT_Bualt13G0053000 [Buddleja alternifolia] | [more] |
| XP_023005635.1 | 3.0e-10 | 50.60 | E3 ubiquitin-protein ligase PUB22-like [Cucurbita maxima] | [more] |
| XP_022952378.1 | 3.0e-10 | 50.60 | E3 ubiquitin-protein ligase PUB22-like [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Q9SVC6 | 4.6e-06 | 33.75 | E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 ... | [more] |
| Q84TG3 | 1.8e-05 | 36.25 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 ... | [more] |
