Lag0038223 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0038223
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr2: 13984452 .. 13984757 (+)
RNA-Seq Expression	Lag0038223
Synteny	Lag0038223

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA

mRNA sequence

ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA

Coding sequence (CDS)

ATGTTCGTGCAGATTTTGAAGGCGGCATTGAAGGTTTTGAGCGTGGCCTGTCCGTGGGGGAGGAACAGAGTGAAGACATTGAGGTCGTTGGGGCTATGGATTTGGTTGAGATCCTACTGGGTGGCGGCGGCGGCGGCGGCGGCGGCGGAGAGGAGGGTGTGTGATATGGCATTGACGGCTGTGTATTTGCTCTGTGGGTGTGCGGATGGACAAGCGGTGCTGCTGGCTCACGACAGAGGGATGGCAATGGTTTCGAAGTGTTTTGGAAATGGCGGCTCCCTCCTTCCTTTTGCTTTTGATTTTTGA

Protein sequence

MFVQILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCGCADGQAVLLAHDRGMAMVSKCFGNGGSLLPFAFDF

Homology

[Close]

BLAST of Lag0038223 vs. NCBI nr
Match: XP_038903290.1 (E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 3.2e-12
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 4   QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
           QI KAAL +L   CPWGRNRVK + + G+ +      +     A  ERRVC+M L A+ L
Sbjct: 243 QIFKAALGILIAVCPWGRNRVKAVEAGGVGV------LVEILLATPERRVCEMTLMAMDL 302

Query: 64  LCGCADGQAVLLAHDRGMAMVSK 87
           LCGCA+G+A LL H  GMA+VSK
Sbjct: 303 LCGCAEGRAALLGHGGGMAVVSK 319

[Close]

BLAST of Lag0038223 vs. NCBI nr
Match: KAG7028156.1 (E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 4   QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
           Q LKAAL +L  AC WGRN+VK + + G+        +     +  ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305

Query: 64  LCGCADGQAVLLAHDRGMAMVSK 87
           LCGCA+G+A LL H  GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322

[Close]

BLAST of Lag0038223 vs. NCBI nr
Match: KAG8371113.1 (hypothetical protein BUALT_Bualt13G0053000 [Buddleja alternifolia])

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 4   QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
           Q  KAALK+L   CPWGRNR+K + +  +++ +           +A+RR C++ LT + L
Sbjct: 240 QATKAALKLLMELCPWGRNRIKAVENGAVFVLIE----LLLDQTSADRRACELILTVLDL 299

Query: 64  LCGCADGQAVLLAHDRGMAMVSK 87
           LCGCADG+A LL H  G+A+VSK
Sbjct: 300 LCGCADGRAELLRHGAGLAVVSK 318

[Close]

BLAST of Lag0038223 vs. NCBI nr
Match: XP_023005635.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita maxima])

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 4   QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
           Q LKAAL +L  AC WGRN+VK + + G+        +     +  ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305

Query: 64  LCGCADGQAVLLAHDRGMAMVSK 87
           LCGCA+G+A LL H  GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322

[Close]

BLAST of Lag0038223 vs. NCBI nr
Match: XP_022952378.1 (E3 ubiquitin-protein ligase PUB22-like [Cucurbita moschata])

HSP 1 Score: 75.5 bits (184), Expect = 3.0e-10
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 4   QILKAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYL 63
           Q LKAAL +L  AC WGRN+VK + + G+        +     +  ERRV +MALTA+ L
Sbjct: 246 QSLKAALGILITACTWGRNKVKAVEAGGV------VALVEILLSGPERRVSEMALTAMDL 305

Query: 64  LCGCADGQAVLLAHDRGMAMVSK 87
           LCGCA+G+A LL H  GMA+VSK
Sbjct: 306 LCGCAEGRAALLGHGGGMAVVSK 322

[Close]

BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match: Q9SVC6 (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-06
Identity = 27/80 (33.75%), Postives = 48/80 (60.00%), Query Frame = 0


Query: 7   KAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCG 66
           ++A+++L + CPWGRNR K +    + + +    +      ++ERR  +MA+  + +LC 
Sbjct: 274 RSAMQILVITCPWGRNRHKAVEGGTISMIIE---LLMDDTFSSERRNSEMAMVVLDMLCQ 333

Query: 67  CADGQAVLLAHDRGMAMVSK 87
           CA+G+A  L H   +A+VSK
Sbjct: 334 CAEGRAEFLNHGAAIAVVSK 350

[Close]

BLAST of Lag0038223 vs. ExPASy Swiss-Prot
Match: Q84TG3 (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-05
Identity = 29/80 (36.25%), Postives = 46/80 (57.50%), Query Frame = 0


Query: 7   KAALKVLSVACPWGRNRVKTLRSLGLWIWLRSYWVAAAAAAAAERRVCDMALTAVYLLCG 66
           KAA+ +L   CPWGRNR K + +  + + +    +    +  +ERR  +MA+  + LLC 
Sbjct: 250 KAAMHILVNICPWGRNRHKAVEAGVISVIIE---LLMDESFTSERRGPEMAMVVLDLLCQ 309

Query: 67  CADGQAVLLAHDRGMAMVSK 87
           CA+G+A  L H   +A+V K
Sbjct: 310 CAEGRAEFLNHGAAIAVVCK 326

The following BLAST results are available for this feature:

BLAST of Lag0038223 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903290.1	3.2e-12	51.81	E3 ubiquitin-protein ligase PUB23-like [Benincasa hispida]	[more]
KAG7028156.1	3.0e-10	50.60	E3 ubiquitin-protein ligase PUB23, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG8371113.1	3.0e-10	45.78	hypothetical protein BUALT_Bualt13G0053000 [Buddleja alternifolia]	[more]
XP_023005635.1	3.0e-10	50.60	E3 ubiquitin-protein ligase PUB22-like [Cucurbita maxima]	[more]
XP_022952378.1	3.0e-10	50.60	E3 ubiquitin-protein ligase PUB22-like [Cucurbita moschata]	[more]

BLAST of Lag0038223 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SVC6	4.6e-06	33.75	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 ...	[more]
Q84TG3	1.8e-05	36.25	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22849:SF11	OS11G0573500 PROTEIN	coord: 4..86
None	No IPR available	PANTHER	PTHR22849	WDSAM1 PROTEIN	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0038223.1	Lag0038223.1	mRNA