Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGGTATTTTTCTCTTTCATGTTCTCCTTTTTCCTTTTTGCCTACTTTTTGCTGTGGGCTGTATGTCAGAGCACAATCCGAGGATTGTTTGTTTGA
mRNA sequence
ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA
Coding sequence (CDS)
ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA
Protein sequence
MFIRFFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAMLSTIRGLFV
Homology
BLAST of IVF0017382 vs. ExPASy TrEMBL
Match:
A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 263 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 304
BLAST of IVF0017382 vs. ExPASy TrEMBL
Match:
B3U2A1 (Nuclear transport family protein OS=Cucumis sativus OX=3659 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142
BLAST of IVF0017382 vs. ExPASy TrEMBL
Match:
A0A0A0L6Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134580 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58
BLAST of IVF0017382 vs. ExPASy TrEMBL
Match:
A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 269 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 310
BLAST of IVF0017382 vs. ExPASy TrEMBL
Match:
A0A6J1DZN7 (putative G3BP-like protein OS=Momordica charantia OX=3673 GN=LOC111024568 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPDYV+QF+S A TM+R+DGNFRE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVHQFYSDASTMLRVDGNFRETATAML 58
BLAST of IVF0017382 vs. NCBI nr
Match:
XP_004134037.1 (nuclear transport factor 2 [Cucumis sativus] >KGN56809.1 hypothetical protein Csa_010305 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 4.37e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58
BLAST of IVF0017382 vs. NCBI nr
Match:
ACA35266.1 (nuclear transport family protein [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 4.52e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142
BLAST of IVF0017382 vs. NCBI nr
Match:
KAA0049207.1 (putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 78.2 bits (191), Expect = 4.54e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 263 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 304
BLAST of IVF0017382 vs. NCBI nr
Match:
XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])
HSP 1 Score: 78.2 bits (191), Expect = 4.54e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 269 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 310
BLAST of IVF0017382 vs. NCBI nr
Match:
XP_038907140.1 (nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907146.1 nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907154.1 nuclear transport factor 2-like isoform X2 [Benincasa hispida])
HSP 1 Score: 77.0 bits (188), Expect = 1.12e-14
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
+FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETATAML 58
BLAST of IVF0017382 vs. TAIR 10
Match:
AT5G43960.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )
HSP 1 Score: 53.5 bits (127), Expect = 6.0e-08
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0
Query: 5 FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
+FVGQYYQVLQQQPD ++QF+S IRIDG+ E+ ++L
Sbjct: 14 YFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLL 55
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CZH4 | 1.5e-11 | 88.10 | Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
B3U2A1 | 1.5e-11 | 88.10 | Nuclear transport family protein OS=Cucumis sativus OX=3659 PE=4 SV=1 | [more] |
A0A0A0L6Y9 | 1.5e-11 | 88.10 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134580 PE=4 SV=1 | [more] |
A0A1S4DSH7 | 1.5e-11 | 88.10 | LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
A0A6J1DZN7 | 2.9e-10 | 78.57 | putative G3BP-like protein OS=Momordica charantia OX=3673 GN=LOC111024568 PE=4 S... | [more] |
Match Name | E-value | Identity | Description | |
XP_004134037.1 | 4.37e-15 | 88.10 | nuclear transport factor 2 [Cucumis sativus] >KGN56809.1 hypothetical protein Cs... | [more] |
ACA35266.1 | 4.52e-15 | 88.10 | nuclear transport family protein [Cucumis sativus] | [more] |
KAA0049207.1 | 4.54e-15 | 88.10 | putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-... | [more] |
XP_016898952.1 | 4.54e-15 | 88.10 | PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo] | [more] |
XP_038907140.1 | 1.12e-14 | 85.71 | nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907146.1 n... | [more] |
Match Name | E-value | Identity | Description | |
AT5G43960.1 | 6.0e-08 | 57.14 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m... | [more] |