IVF0017382 (gene) Melon (IVF77) v1

Overview


Name	IVF0017382
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	nuclear transport factor 2-like
Location	chr10: 10351717 .. 10351947 (+)
RNA-Seq Expression	IVF0017382
Synteny	IVF0017382

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGGTATTTTTCTCTTTCATGTTCTCCTTTTTCCTTTTTGCCTACTTTTTGCTGTGGGCTGTATGTCAGAGCACAATCCGAGGATTGTTTGTTTGA

mRNA sequence

ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA

Coding sequence (CDS)

ATGTTCATCAGGTTCTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTATGTTTATCAGTTCCATTCTCATGCCTGTACTATGATCCGGATTGATGGCAATTTCAGAGAGTCCACCACTGCAATGCTGAGCACAATCCGAGGATTGTTTGTTTGA

Protein sequence

MFIRFFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAMLSTIRGLFV

Homology

[Close]

BLAST of IVF0017382 vs. ExPASy TrEMBL
Match: A0A5D3CZH4 (Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002080 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 263 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 304

[Close]

BLAST of IVF0017382 vs. ExPASy TrEMBL
Match: B3U2A1 (Nuclear transport family protein OS=Cucumis sativus OX=3659 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142

[Close]

BLAST of IVF0017382 vs. ExPASy TrEMBL
Match: A0A0A0L6Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134580 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58

[Close]

BLAST of IVF0017382 vs. ExPASy TrEMBL
Match: A0A1S4DSH7 (LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC103483544 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 269 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 310

[Close]

BLAST of IVF0017382 vs. ExPASy TrEMBL
Match: A0A6J1DZN7 (putative G3BP-like protein OS=Momordica charantia OX=3673 GN=LOC111024568 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.9e-10
Identity = 33/42 (78.57%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPDYV+QF+S A TM+R+DGNFRE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVHQFYSDASTMLRVDGNFRETATAML 58

[Close]

BLAST of IVF0017382 vs. NCBI nr
Match: XP_004134037.1 (nuclear transport factor 2 [Cucumis sativus] >KGN56809.1 hypothetical protein Csa_010305 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.37e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 58

[Close]

BLAST of IVF0017382 vs. NCBI nr
Match: ACA35266.1 (nuclear transport family protein [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.52e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 101 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 142

[Close]

BLAST of IVF0017382 vs. NCBI nr
Match: KAA0049207.1 (putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.54e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 263 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 304

[Close]

BLAST of IVF0017382 vs. NCBI nr
Match: XP_016898952.1 (PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 4.54e-15
Identity = 37/42 (88.10%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5   FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
           +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRES TAML
Sbjct: 269 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRESATAML 310

[Close]

BLAST of IVF0017382 vs. NCBI nr
Match: XP_038907140.1 (nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907146.1 nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907154.1 nuclear transport factor 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 1.12e-14
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 46
          +FVGQYYQVLQQQPDYVYQF+S A TMIRIDGNFRE+ TAML
Sbjct: 17 YFVGQYYQVLQQQPDYVYQFYSDASTMIRIDGNFRETATAML 58

[Close]

BLAST of IVF0017382 vs. TAIR 10
Match: AT5G43960.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )

HSP 1 Score: 53.5 bits (127), Expect = 6.0e-08
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 5  FFVGQYYQVLQQQPDYVYQFHSHACTMIRIDGNFRESTTAML 47
          +FVGQYYQVLQQQPD ++QF+S     IRIDG+  E+  ++L
Sbjct: 14 YFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLL 55

The following BLAST results are available for this feature:

BLAST of IVF0017382 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0017382 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZH4	1.5e-11	88.10	Putative G3BP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
B3U2A1	1.5e-11	88.10	Nuclear transport family protein OS=Cucumis sativus OX=3659 PE=4 SV=1	[more]
A0A0A0L6Y9	1.5e-11	88.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G134580 PE=4 SV=1	[more]
A0A1S4DSH7	1.5e-11	88.10	LOW QUALITY PROTEIN: putative G3BP-like protein OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1DZN7	2.9e-10	78.57	putative G3BP-like protein OS=Momordica charantia OX=3673 GN=LOC111024568 PE=4 S...	[more]

BLAST of IVF0017382 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134037.1	4.37e-15	88.10	nuclear transport factor 2 [Cucumis sativus] >KGN56809.1 hypothetical protein Cs...	[more]
ACA35266.1	4.52e-15	88.10	nuclear transport family protein [Cucumis sativus]	[more]
KAA0049207.1	4.54e-15	88.10	putative G3BP-like protein [Cucumis melo var. makuwa] >TYK17351.1 putative G3BP-...	[more]
XP_016898952.1	4.54e-15	88.10	PREDICTED: LOW QUALITY PROTEIN: putative G3BP-like protein [Cucumis melo]	[more]
XP_038907140.1	1.12e-14	85.71	nuclear transport factor 2-like isoform X2 [Benincasa hispida] >XP_038907146.1 n...	[more]

BLAST of IVF0017382 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43960.1	6.0e-08	57.14	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.450.50		coord: 4..52 e-value: 4.8E-5 score: 25.2
None	No IPR available	PANTHER	PTHR10693:SF29	GB\|AAD20086.1	coord: 5..47
IPR039539	Ras GTPase-activating protein-binding protein	PANTHER	PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	coord: 5..47
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 5..38

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0017382.1	IVF0017382.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005829	cytosol
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding