Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGTCAAATGGAGACGATCAAATAATGACAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG
mRNA sequence
ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG
Coding sequence (CDS)
ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG
Protein sequence
MRVIQTQNHQEVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF
Homology
BLAST of PI0021263 vs. ExPASy TrEMBL
Match:
A0A5A7TIB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00210 PE=4 SV=1)
HSP 1 Score: 90.5 bits (223), Expect = 2.8e-15
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 0
Query: 1 MRVIQTQNHQEVVENKIIR----------GGMTKDKLNVIIVINSTIIPGNAEIELKKIQ 60
++VIQTQ HQEV E+ IIR GGMTKD+LNVIIVINS I+ GNAEIELKK+Q
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287
Query: 61 IILRKMKKPVIHHCF 66
I+LRKMKK VI HCF
Sbjct: 288 IMLRKMKKAVIPHCF 302
BLAST of PI0021263 vs. ExPASy TrEMBL
Match:
A0A5A7UV40 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00400 PE=4 SV=1)
HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0
Query: 11 EVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF 66
+V +++I+ GGMTKD LNVIIVIN II GNAEIE KK+Q +L+ MKK VI HCF
Sbjct: 98 QVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152
BLAST of PI0021263 vs. ExPASy TrEMBL
Match:
A0A5C7HBT8 (gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019261 PE=4 SV=1)
HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0
Query: 2 RVIQTQNHQEVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVI 61
RV++ ++ Q E+K++ GMTK KL++IIVIN PGNA+ E KKI L++ K V
Sbjct: 14 RVVEDKSTQGHTEDKMMTRGMTKAKLSIIIVINLATTPGNAKAEFKKISTTLKRRTKVVS 73
Query: 62 HHCF 66
H F
Sbjct: 74 PHYF 77
BLAST of PI0021263 vs. NCBI nr
Match:
KAA0043083.1 (uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa])
HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 0
Query: 1 MRVIQTQNHQEVVENKIIR----------GGMTKDKLNVIIVINSTIIPGNAEIELKKIQ 60
++VIQTQ HQEV E+ IIR GGMTKD+LNVIIVINS I+ GNAEIELKK+Q
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287
Query: 61 IILRKMKKPVIHHCF 66
I+LRKMKK VI HCF
Sbjct: 288 IMLRKMKKAVIPHCF 302
BLAST of PI0021263 vs. NCBI nr
Match:
KAA0058597.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 67.4 bits (163), Expect = 5.2e-08
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0
Query: 11 EVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF 66
+V +++I+ GGMTKD LNVIIVIN II GNAEIE KK+Q +L+ MKK VI HCF
Sbjct: 98 QVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152
BLAST of PI0021263 vs. NCBI nr
Match:
XP_031737535.1 (uncharacterized protein LOC105435097 [Cucumis sativus])
HSP 1 Score: 57.0 bits (136), Expect = 7.0e-05
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0
Query: 23 TKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKK 59
TKD+LNVIIVIN II GNAEIELKK+QI+LRKMKK
Sbjct: 309 TKDRLNVIIVINLAIIHGNAEIELKKMQIMLRKMKK 344
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7TIB1 | 2.8e-15 | 68.00 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7UV40 | 2.5e-08 | 65.45 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A5C7HBT8 | 6.4e-04 | 45.31 | gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0043083.1 | 5.7e-15 | 68.00 | uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa] | [more] |
| KAA0058597.1 | 5.2e-08 | 65.45 | retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon p... | [more] |
| XP_031737535.1 | 7.0e-05 | 83.33 | uncharacterized protein LOC105435097 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
