PI0021263 (gene) Melon (PI 482460) v1

Overview


Name	PI0021263
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	gag_pre-integrs domain-containing protein
Location	chr09: 10904038 .. 10904264 (-)
RNA-Seq Expression	PI0021263
Synteny	PI0021263

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGTCAAATGGAGACGATCAAATAATGACAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG

mRNA sequence

ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG

Coding sequence (CDS)

ATGAGAGTAATTCAAACTCAAAATCATCAAGAGGTCGTGGAAAACAAAATTATTCGAGGAGGTATGACAAAAGACAAGTTGAATGTTATAATTGTCATAAATTCGACCATTATTCCTGGGAATGCAGAAATAGAGTTGAAGAAAATACAAATTATACTAAGAAAGATGAAGAAACCGGTGATTCATCATTGCTTCTAG

Protein sequence

MRVIQTQNHQEVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF

Homology

[Close]

BLAST of PI0021263 vs. ExPASy TrEMBL
Match: A0A5A7TIB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00210 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.8e-15
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MRVIQTQNHQEVVENKIIR----------GGMTKDKLNVIIVINSTIIPGNAEIELKKIQ 60
           ++VIQTQ HQEV E+ IIR          GGMTKD+LNVIIVINS I+ GNAEIELKK+Q
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

Query: 61  IILRKMKKPVIHHCF 66
           I+LRKMKK VI HCF
Sbjct: 288 IMLRKMKKAVIPHCF 302

[Close]

BLAST of PI0021263 vs. ExPASy TrEMBL
Match: A0A5A7UV40 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00400 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.5e-08
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 11  EVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF 66
           +V +++I+ GGMTKD LNVIIVIN  II GNAEIE KK+Q +L+ MKK VI HCF
Sbjct: 98  QVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

[Close]

BLAST of PI0021263 vs. ExPASy TrEMBL
Match: A0A5C7HBT8 (gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019261 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.4e-04
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 0


Query: 2  RVIQTQNHQEVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVI 61
          RV++ ++ Q   E+K++  GMTK KL++IIVIN    PGNA+ E KKI   L++  K V 
Sbjct: 14 RVVEDKSTQGHTEDKMMTRGMTKAKLSIIIVINLATTPGNAKAEFKKISTTLKRRTKVVS 73

Query: 62 HHCF 66
           H F
Sbjct: 74 PHYF 77

[Close]

BLAST of PI0021263 vs. NCBI nr
Match: KAA0043083.1 (uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 5.7e-15
Identity = 51/75 (68.00%), Postives = 58/75 (77.33%), Query Frame = 0


Query: 1   MRVIQTQNHQEVVENKIIR----------GGMTKDKLNVIIVINSTIIPGNAEIELKKIQ 60
           ++VIQTQ HQEV E+ IIR          GGMTKD+LNVIIVINS I+ GNAEIELKK+Q
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

Query: 61  IILRKMKKPVIHHCF 66
           I+LRKMKK VI HCF
Sbjct: 288 IMLRKMKKAVIPHCF 302

[Close]

BLAST of PI0021263 vs. NCBI nr
Match: KAA0058597.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.4 bits (163), Expect = 5.2e-08
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 11  EVVENKIIRGGMTKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKKPVIHHCF 66
           +V +++I+ GGMTKD LNVIIVIN  II GNAEIE KK+Q +L+ MKK VI HCF
Sbjct: 98  QVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

[Close]

BLAST of PI0021263 vs. NCBI nr
Match: XP_031737535.1 (uncharacterized protein LOC105435097 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 7.0e-05
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 23  TKDKLNVIIVINSTIIPGNAEIELKKIQIILRKMKK 59
           TKD+LNVIIVIN  II GNAEIELKK+QI+LRKMKK
Sbjct: 309 TKDRLNVIIVINLAIIHGNAEIELKKMQIMLRKMKK 344

The following BLAST results are available for this feature:

BLAST of PI0021263 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB1	2.8e-15	68.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UV40	2.5e-08	65.45	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5C7HBT8	6.4e-04	45.31	gag_pre-integrs domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62...	[more]

BLAST of PI0021263 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043083.1	5.7e-15	68.00	uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa]	[more]
KAA0058597.1	5.2e-08	65.45	retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon p...	[more]
XP_031737535.1	7.0e-05	83.33	uncharacterized protein LOC105435097 [Cucumis sativus]	[more]

BLAST of PI0021263 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021263.1	PI0021263.1	mRNA