Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGG GTCCCTCCACCTTCCATACTAAATACTCTACTCCACACCACAACCCCTTCTAACCATTTCTGTATATTTCTCGCAGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGG GTTTCTCTTGCCGATCATTCTTTTTCTCATCATACTTGCTGTCCTCTCATCAATCGCCTTCACCCCATTTTAGGTACTCTCTCAATCTCAAATGGTTTTGCATTATCGTTTTGGTTTTCGTCTGAAATGCTTGCTTTGATTAGTTTTTTTCCCCATTTGTGTATGTGTCTGTCTTGCTTTTGGGTTTTGTGTTGGGGATATGATTTTTGTTGTTGGTGGTGGTTTTGAACTTTCATGCCCTGTTTTTCTCTGACTCTGTTTGGTTCTTGGGAAATTTTTTGAAGATGAAATTGTGTTTTGGGTTTTTGTGGGTTTTGAAACTAAACCCTGACTGGTGTATAGAAAGTTCTCGAAACCCAAATGGTTGTTTTGGGTATGGCGTAATTAGCATTACATACAAAGGTCTGTTTTCTTTCCAGTAAATGACGAACTCACCGCTACTTTCATGGCTGTGTTTTTGTTTTTGTCCTTTATTGTGGATGATAACGTAATAATCTTCAGCTTTAACCAGCATTTCTCTTTTGCATTTTTGCATTTTTGCATTTTTGTGGAGTTTTTAGAAGAAAGCCCTTCTTCTTCCTTGTTTCTGATTATTTTTCTTTTTTCTTCTTATGGAAGTGCGAACTCTTCTCTGCGCATTAGTTAAACTTGTGATCTCTCTGTCTTGGAATGTTCAGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAG GTAATATATTTTATGAAGTTCTAAGATCTATGTCTTTTCTTATTCCATTTGAGTTGGTGGTATTCAAAATAGTTTAGGATATGTTAGTTACTTTTGTTTTGTTTAATTTTGTGAGTTCGAAGCAGCATGTCTGTGTGTGGAACTGCTAATATTTTGAGTCTTTTAAGAAACTTTGATTTAAAATTCCCATAGTTTGAGGCAATCTTAGTGTATTCACTTATTGTAACGGCTAGCTGATTCTGTTTTAATTTATTATGTTCTTCCCTATTTTATAGGCTTCTGGGAACTGTTTGACATAA mRNA sequence
ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGGGAACTGTTTGACATAA Coding sequence (CDS)
ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGGGAACTGTTTGACATAA Protein sequence
MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPYLFGTSPFFFSSTGVLALRSETVRQELFGFLCTTFEASGNCLT
Homology
BLAST of PI0005356 vs. ExPASy TrEMBL
Match:
A0A0A0LGZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1)
HSP 1 Score: 177.2 bits (448), Expect = 3.5e-41
Identity = 96/126 (76.19%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 1 MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPY 60 MAPVSS+GGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSF LFIL IPPSLPY Sbjct: 1 MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60 Query: 61 LFGTSPFFFSSTG------------------------VLALRSETVRQELFGFLCTTFEA 103 LFGTS FFFSSTG VLALRSETVRQELFGFLCTTFEA Sbjct: 61 LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120
BLAST of PI0005356 vs. NCBI nr
Match:
KGN59321.1 (hypothetical protein Csa_001994 [Cucumis sativus])
HSP 1 Score: 177.2 bits (448), Expect = 7.3e-41
Identity = 96/126 (76.19%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 1 MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPY 60 MAPVSS+GGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSF LFIL IPPSLPY Sbjct: 1 MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60 Query: 61 LFGTSPFFFSSTG------------------------VLALRSETVRQELFGFLCTTFEA 103 LFGTS FFFSSTG VLALRSETVRQELFGFLCTTFEA Sbjct: 61 LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120
BLAST of PI0005356 vs. NCBI nr
Match:
XP_038903928.1 (FT-interacting protein 3 isoform X1 [Benincasa hispida])
HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 44/86 (51.16%), Postives = 44/86 (51.16%), Query Frame = 0
Query: 40 FLSFFSSFFLFILRIPP-------SLPYLFGTSPFFFSSTG------------------- 96 F F S F L PP SLPYLF TSPFFFSSTG Sbjct: 66 FPCFPSPLVPFFLVFPPYPHPPYHSLPYLFATSPFFFSSTGFLLPIILFPSCNRSHQSPS 125
The following BLAST results are available for this feature:
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A0A0LGZ7 3.5e-41 76.19 Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1 [more]
Match Name E-value Identity Description
KGN59321.1 7.3e-41 76.19 hypothetical protein Csa_001994 [Cucumis sativus] [more]
XP_038903928.1 1.2e-06 51.16 FT-interacting protein 3 isoform X1 [Benincasa hispida] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
A T G G C A C C T G T G A G C T C C C A T G G T G G T C C T T C A C A C G C T T C A T T T G G A T T C A T C A G A T C C C A A C C C A T A A A G C A A T T C T G C A A A A A G C A A A A G C A C T T C T G C T C T G C T A A C C C C T C T T T C C T T T C C T T T T T C T C C T C G T T T T T C C T C T T T A T C C T C C G C A T C C C C C C T T C T C T T C C T T A T C T C T T T G G A A C T T C A C C A T T T T T C T T T T C C T C A A C T G G G G T T C T G G C A C T T A G A T C T G A A A C C G T C C G A C A A G A A C T G T T T G G A T T T C T A T G T A C T A C T T T T G A G G C T T C T G G G A A C T G T T T G A C A T A A 50 100 150 200 250 300 Score = Sequence Coil
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 101..102
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category
Term Accession
Term Name
cellular_component
GO:0016020
membrane