PI0005356 (gene) Melon (PI 482460) v1

Overview


Name	PI0005356
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 6501803 .. 6503139 (+)
RNA-Seq Expression	PI0005356
Synteny	PI0005356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGGGTCCCTCCACCTTCCATACTAAATACTCTACTCCACACCACAACCCCTTCTAACCATTTCTGTATATTTCTCGCAGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGGGTTTCTCTTGCCGATCATTCTTTTTCTCATCATACTTGCTGTCCTCTCATCAATCGCCTTCACCCCATTTTAGGTACTCTCTCAATCTCAAATGGTTTTGCATTATCGTTTTGGTTTTCGTCTGAAATGCTTGCTTTGATTAGTTTTTTTCCCCATTTGTGTATGTGTCTGTCTTGCTTTTGGGTTTTGTGTTGGGGATATGATTTTTGTTGTTGGTGGTGGTTTTGAACTTTCATGCCCTGTTTTTCTCTGACTCTGTTTGGTTCTTGGGAAATTTTTTGAAGATGAAATTGTGTTTTGGGTTTTTGTGGGTTTTGAAACTAAACCCTGACTGGTGTATAGAAAGTTCTCGAAACCCAAATGGTTGTTTTGGGTATGGCGTAATTAGCATTACATACAAAGGTCTGTTTTCTTTCCAGTAAATGACGAACTCACCGCTACTTTCATGGCTGTGTTTTTGTTTTTGTCCTTTATTGTGGATGATAACGTAATAATCTTCAGCTTTAACCAGCATTTCTCTTTTGCATTTTTGCATTTTTGCATTTTTGTGGAGTTTTTAGAAGAAAGCCCTTCTTCTTCCTTGTTTCTGATTATTTTTCTTTTTTCTTCTTATGGAAGTGCGAACTCTTCTCTGCGCATTAGTTAAACTTGTGATCTCTCTGTCTTGGAATGTTCAGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGTAATATATTTTATGAAGTTCTAAGATCTATGTCTTTTCTTATTCCATTTGAGTTGGTGGTATTCAAAATAGTTTAGGATATGTTAGTTACTTTTGTTTTGTTTAATTTTGTGAGTTCGAAGCAGCATGTCTGTGTGTGGAACTGCTAATATTTTGAGTCTTTTAAGAAACTTTGATTTAAAATTCCCATAGTTTGAGGCAATCTTAGTGTATTCACTTATTGTAACGGCTAGCTGATTCTGTTTTAATTTATTATGTTCTTCCCTATTTTATAGGCTTCTGGGAACTGTTTGACATAA

mRNA sequence

ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGGGAACTGTTTGACATAA

Coding sequence (CDS)

ATGGCACCTGTGAGCTCCCATGGTGGTCCTTCACACGCTTCATTTGGATTCATCAGATCCCAACCCATAAAGCAATTCTGCAAAAAGCAAAAGCACTTCTGCTCTGCTAACCCCTCTTTCCTTTCCTTTTTCTCCTCGTTTTTCCTCTTTATCCTCCGCATCCCCCCTTCTCTTCCTTATCTCTTTGGAACTTCACCATTTTTCTTTTCCTCAACTGGGGTTCTGGCACTTAGATCTGAAACCGTCCGACAAGAACTGTTTGGATTTCTATGTACTACTTTTGAGGCTTCTGGGAACTGTTTGACATAA

Protein sequence

MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPYLFGTSPFFFSSTGVLALRSETVRQELFGFLCTTFEASGNCLT

Homology

[Close]

BLAST of PI0005356 vs. ExPASy TrEMBL
Match: A0A0A0LGZ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.5e-41
Identity = 96/126 (76.19%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 1   MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPY 60
           MAPVSS+GGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSF LFIL IPPSLPY
Sbjct: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60

Query: 61  LFGTSPFFFSSTG------------------------VLALRSETVRQELFGFLCTTFEA 103
           LFGTS FFFSSTG                        VLALRSETVRQELFGFLCTTFEA
Sbjct: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120

[Close]

BLAST of PI0005356 vs. NCBI nr
Match: KGN59321.1 (hypothetical protein Csa_001994 [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 7.3e-41
Identity = 96/126 (76.19%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 1   MAPVSSHGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFFLFILRIPPSLPY 60
           MAPVSS+GGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSF LFIL IPPSLPY
Sbjct: 1   MAPVSSNGGPSHASFGFIRSQPIKQFCKKQKHFCSANPSFLSFFSSFSLFILLIPPSLPY 60

Query: 61  LFGTSPFFFSSTG------------------------VLALRSETVRQELFGFLCTTFEA 103
           LFGTS FFFSSTG                        VLALRSETVRQELFGFLCTTFEA
Sbjct: 61  LFGTSAFFFSSTGFLLPIILFSSYLLSSHHSPSPHFRVLALRSETVRQELFGFLCTTFEA 120

[Close]

BLAST of PI0005356 vs. NCBI nr
Match: XP_038903928.1 (FT-interacting protein 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 44/86 (51.16%), Postives = 44/86 (51.16%), Query Frame = 0


Query: 40  FLSFFSSFFLFILRIPP-------SLPYLFGTSPFFFSSTG------------------- 96
           F  F S    F L  PP       SLPYLF TSPFFFSSTG                   
Sbjct: 66  FPCFPSPLVPFFLVFPPYPHPPYHSLPYLFATSPFFFSSTGFLLPIILFPSCNRSHQSPS 125

The following BLAST results are available for this feature:

BLAST of PI0005356 vs.


Match Name	E-value	Identity	Description

BLAST of PI0005356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGZ7	3.5e-41	76.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809970 PE=4 SV=1	[more]

BLAST of PI0005356 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59321.1	7.3e-41	76.19	hypothetical protein Csa_001994 [Cucumis sativus]	[more]
XP_038903928.1	1.2e-06	51.16	FT-interacting protein 3 isoform X1 [Benincasa hispida]	[more]

BLAST of PI0005356 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..102

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0005356.1	PI0005356.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane