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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. AATTGTATTACCACGTGGAGGACAGAAAAAGGTCCAACTTTGGAGGTCTTCCTTTTGGTGGTCGACCTGAAGATGTTCCCTTTGATGGCCGACTTGAAGATCTTCCTTTTGGTGGCCGACCTGAAGTGGCCAACCTAAAGAGCTCCACTGAGGGCTGATCTAAAGAGCTCCACTGAGAGCCAACCTGAAGAGCTCCCCTGAGGGCTGACCTGAAGGCCTTGTCTAATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAGGGCACTTCACTCTTCAGTCAGGTATCGTATTCTAGCTCGGCCTCCATATTAAGGTCGACTCAAAACTAACTTGAGCGTCGGAGTGTTTGTTCCCTTTTGCAGGTTTTTCCTCGCCAAGTGGCCTTTCAGCTCATTCCTGACACCAACTCATCCCAGTCAGCCGACCTTGACCCTTTGAGCTGGTCATCCCTTTCCAAGGAAACCCAAGCTCTTCCCGCGATCATACCTGAAGCAGGTCATGCTCTTCCCGCGATCATACCTAAAAAGCAGGTCATGCTCTCCCGACGATTATACTTGGAGCAGGTCGAGCTCTTCCCTGTGGCCAACCTTGACCAGG mRNA sequence ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAG Coding sequence (CDS) ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAG Protein sequence MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSLSGTSAYK
Homology
BLAST of MC09g_new0258 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]) HSP 1 Score: 115 bits (287), Expect = 8.33e-28 Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0
Query: 1 MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSL 60
MADLRPSLKADLKVFPEDHS EERPSILSQ+PD KSMNWNSY RQADL PDMLNR SDSL
Sbjct: 1 MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60
Query: 61 SG 62
SG
Sbjct: 61 SG 62
BLAST of MC09g_new0258 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1) HSP 1 Score: 115 bits (287), Expect = 4.03e-28 Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0
Query: 1 MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSL 60
MADLRPSLKADLKVFPEDHS EERPSILSQ+PD KSMNWNSY RQADL PDMLNR SDSL
Sbjct: 1 MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60
Query: 61 SG 62
SG
Sbjct: 61 SG 62
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| XP_022143495.1 | 8.33e-28 | 90.32 | LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1CNY7 | 4.03e-28 | 90.32 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..28 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 31..67 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..67 |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071897 |
DNA biosynthetic process |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| biological_process |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
| molecular_function |
GO:0003887 |
DNA-directed DNA polymerase activity |
| molecular_function |
GO:0003723 |
RNA binding |
| molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
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