MC09g_new0258 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0258
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribonuclease H
Location	MC09: 12224230 .. 12224995 (+)
RNA-Seq Expression	MC09g_new0258
Synteny	MC09g_new0258

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTGTATTACCACGTGGAGGACAGAAAAAGGTCCAACTTTGGAGGTCTTCCTTTTGGTGGTCGACCTGAAGATGTTCCCTTTGATGGCCGACTTGAAGATCTTCCTTTTGGTGGCCGACCTGAAGTGGCCAACCTAAAGAGCTCCACTGAGGGCTGATCTAAAGAGCTCCACTGAGAGCCAACCTGAAGAGCTCCCCTGAGGGCTGACCTGAAGGCCTTGTCTAATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAGGGCACTTCACTCTTCAGTCAGGTATCGTATTCTAGCTCGGCCTCCATATTAAGGTCGACTCAAAACTAACTTGAGCGTCGGAGTGTTTGTTCCCTTTTGCAGGTTTTTCCTCGCCAAGTGGCCTTTCAGCTCATTCCTGACACCAACTCATCCCAGTCAGCCGACCTTGACCCTTTGAGCTGGTCATCCCTTTCCAAGGAAACCCAAGCTCTTCCCGCGATCATACCTGAAGCAGGTCATGCTCTTCCCGCGATCATACCTAAAAAGCAGGTCATGCTCTCCCGACGATTATACTTGGAGCAGGTCGAGCTCTTCCCTGTGGCCAACCTTGACCAGG

mRNA sequence

ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAG

Coding sequence (CDS)

ATGGCCGACCTGAGGCCTTCCCTAAAGGCCGATCTGAAGGTCTTCCCTGAAGATCATTCAAAGGAGGAACGACCTTCCATACTTAGTCAAATTCCAGATGGCAAGAGTATGAACTGGAATAGCTACCCCCGACAGGCCGACCTTAGTCCCGACATGCTCAACCGCCGGTCGGATTCCTTGTCGGGTACCTCAGCCTATAAATAG

Protein sequence

MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSLSGTSAYK

Homology

[Close]

BLAST of MC09g_new0258 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 115 bits (287), Expect = 8.33e-28
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSL 60
          MADLRPSLKADLKVFPEDHS EERPSILSQ+PD KSMNWNSY RQADL PDMLNR SDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62

[Close]

BLAST of MC09g_new0258 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 4.03e-28
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MADLRPSLKADLKVFPEDHSKEERPSILSQIPDGKSMNWNSYPRQADLSPDMLNRRSDSL 60
          MADLRPSLKADLKVFPEDHS EERPSILSQ+PD KSMNWNSY RQADL PDMLNR SDSL
Sbjct: 1  MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60

Query: 61 SG 62
          SG
Sbjct: 61 SG 62

The following BLAST results are available for this feature:

BLAST of MC09g_new0258 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0258 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143495.1	8.33e-28	90.32	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of MC09g_new0258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY7	4.03e-28	90.32	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]

BLAST of MC09g_new0258 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0258.1	MC09g_new0258.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity