Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA
mRNA sequence
ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA
Coding sequence (CDS)
ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA
Protein sequence
MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVHPGNVFAVSANSNS
Homology
BLAST of Csor.00g059500 vs. NCBI nr
Match:
KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 145 bits (367), Expect = 6.78e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH
Sbjct: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
Query: 61 PGNVFAVSANSNS 73
PGNVFAVSANSNS
Sbjct: 61 PGNVFAVSANSNS 73
BLAST of Csor.00g059500 vs. NCBI nr
Match:
KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])
HSP 1 Score: 107 bits (268), Expect = 8.46e-29
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH A GGIAGK+ KKVH
Sbjct: 1 MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHH-AAGGIAGKSSKKVH 60
Query: 61 PGNVFAVSANSNS 73
PG +F + A SNS
Sbjct: 61 PGTLFGLQATSNS 72
BLAST of Csor.00g059500 vs. NCBI nr
Match:
KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])
HSP 1 Score: 104 bits (260), Expect = 1.48e-27
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLED--TVKPPKSAHHHAGGGIAGKACKK 60
MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED +VKPPK+AHH GGGIAGK+ KK
Sbjct: 1 MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHH-GGGGIAGKSSKK 60
Query: 61 VHPGNVFAVSANSNS 73
VHPG VF V SNS
Sbjct: 61 VHPGTVFGVPPTSNS 74
BLAST of Csor.00g059500 vs. NCBI nr
Match:
KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 96.3 bits (238), Expect = 3.10e-24
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
MSS+GA+CARVYVM+KK EEKL+RMEQE+AGR ED VKP K+AHH GG AG CKKVH
Sbjct: 1 MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH--GGAFAGITCKKVH 60
Query: 61 PGNVFAVSANSNS 73
PG V +V A++ S
Sbjct: 61 PGTVISVPASNIS 71
BLAST of Csor.00g059500 vs. NCBI nr
Match:
KAF4400541.1 (hypothetical protein G4B88_023334 [Cannabis sativa])
HSP 1 Score: 59.3 bits (142), Expect = 1.50e-09
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
MSS+GA+CA VYVM+K+ +EK+ RME+ERA + +T + K+A H GGG A KK
Sbjct: 1 MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60
Query: 61 VHPGN 63
VHPGN
Sbjct: 61 VHPGN 65
BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match:
A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)
HSP 1 Score: 107 bits (268), Expect = 4.09e-29
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH A GGIAGK+ KKVH
Sbjct: 1 MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHH-AAGGIAGKSSKKVH 60
Query: 61 PGNVFAVSANSNS 73
PG +F + A SNS
Sbjct: 61 PGTLFGLQATSNS 72
BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match:
A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)
HSP 1 Score: 104 bits (260), Expect = 7.18e-28
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLED--TVKPPKSAHHHAGGGIAGKACKK 60
MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED +VKPPK+AHH GGGIAGK+ KK
Sbjct: 1 MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHH-GGGGIAGKSSKK 60
Query: 61 VHPGNVFAVSANSNS 73
VHPG VF V SNS
Sbjct: 61 VHPGTVFGVPPTSNS 74
BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match:
A0A7J6I0D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 7.27e-10
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
MSS+GA+CA VYVM+K+ +EK+ RME+ERA + +T + K+A H GGG A KK
Sbjct: 1 MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60
Query: 61 VHPGN 63
VHPGN
Sbjct: 61 VHPGN 65
BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match:
A0A7J6E0F2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1)
HSP 1 Score: 59.3 bits (142), Expect = 1.67e-09
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
MSS+GA+CA VYVM+K+ +EK+ RME+ERA + +T + K+A H GGG A KK
Sbjct: 1 MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60
Query: 61 VHPGN 63
VHPGN
Sbjct: 61 VHPGN 65
BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match:
A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)
HSP 1 Score: 56.6 bits (135), Expect = 8.61e-09
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 0
Query: 1 MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
MSS+GA+CA +YVMRK+ +EKLKRME+ER + E +V+ K + G G++ KKVH
Sbjct: 1 MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS-----GSTIGRS-KKVH 60
Query: 61 PGNVFAVSANS 71
PG F S NS
Sbjct: 61 PG--FFTSQNS 63
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAG6604014.1 | 6.78e-44 | 100.00 | hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KGN48780.1 | 8.46e-29 | 73.97 | hypothetical protein Csa_002943 [Cucumis sativus] | [more] |
| KAA0036273.1 | 1.48e-27 | 74.67 | hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667... | [more] |
| KAG6594855.1 | 3.10e-24 | 68.49 | hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAF4400541.1 | 1.50e-09 | 53.85 | hypothetical protein G4B88_023334 [Cannabis sativa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KGB8 | 4.09e-29 | 73.97 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1 | [more] |
| A0A5A7T065 | 7.18e-28 | 74.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A7J6I0D6 | 7.27e-10 | 53.85 | Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1 | [more] |
| A0A7J6E0F2 | 1.67e-09 | 53.85 | Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1 | [more] |
| A0A2N9EUS9 | 8.61e-09 | 50.70 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
