Csor.00g059500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g059500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr03: 6607424 .. 6607645 (+)
RNA-Seq Expression	Csor.00g059500
Synteny	Csor.00g059500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA

mRNA sequence

ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA

Coding sequence (CDS)

ATGTCCTCCATGGGAGCTGCCTGCGCTAGGGTTTACGTAATGAGGAAGAAAACGGAGGAGAAACTGAAGAGGATGGAGCAGGAGAGAGCTGGCAGGTTAGAAGACACCGTCAAACCTCCAAAATCCGCCCATCACCACGCCGGCGGCGGCATCGCCGGAAAAGCCTGTAAGAAAGTCCATCCCGGTAACGTATTCGCGGTTTCCGCGAACTCTAATTCCTGA

Protein sequence

MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVHPGNVFAVSANSNS

Homology

[Close]

BLAST of Csor.00g059500 vs. NCBI nr
Match: KAG6604014.1 (hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145 bits (367), Expect = 6.78e-44
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
          MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH
Sbjct: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60

Query: 61 PGNVFAVSANSNS 73
          PGNVFAVSANSNS
Sbjct: 61 PGNVFAVSANSNS 73

[Close]

BLAST of Csor.00g059500 vs. NCBI nr
Match: KGN48780.1 (hypothetical protein Csa_002943 [Cucumis sativus])

HSP 1 Score: 107 bits (268), Expect = 8.46e-29
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH A GGIAGK+ KKVH
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHH-AAGGIAGKSSKKVH 60

Query: 61 PGNVFAVSANSNS 73
          PG +F + A SNS
Sbjct: 61 PGTLFGLQATSNS 72

[Close]

BLAST of Csor.00g059500 vs. NCBI nr
Match: KAA0036273.1 (hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667.1 hypothetical protein E5676_scaffold255G002550 [Cucumis melo var. makuwa])

HSP 1 Score: 104 bits (260), Expect = 1.48e-27
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLED--TVKPPKSAHHHAGGGIAGKACKK 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED  +VKPPK+AHH  GGGIAGK+ KK
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHH-GGGGIAGKSSKK 60

Query: 61 VHPGNVFAVSANSNS 73
          VHPG VF V   SNS
Sbjct: 61 VHPGTVFGVPPTSNS 74

[Close]

BLAST of Csor.00g059500 vs. NCBI nr
Match: KAG6594855.1 (hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 3.10e-24
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
          MSS+GA+CARVYVM+KK EEKL+RMEQE+AGR ED VKP K+AHH  GG  AG  CKKVH
Sbjct: 1  MSSIGASCARVYVMKKKVEEKLQRMEQEKAGRREDLVKPSKTAHH--GGAFAGITCKKVH 60

Query: 61 PGNVFAVSANSNS 73
          PG V +V A++ S
Sbjct: 61 PGTVISVPASNIS 71

[Close]

BLAST of Csor.00g059500 vs. NCBI nr
Match: KAF4400541.1 (hypothetical protein G4B88_023334 [Cannabis sativa])

HSP 1 Score: 59.3 bits (142), Expect = 1.50e-09
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
          MSS+GA+CA VYVM+K+ +EK+ RME+ERA +  +T +  K+A   H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPGN 63
          VHPGN
Sbjct: 61 VHPGN 65

[Close]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match: A0A0A0KGB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 4.09e-29
Identity = 54/73 (73.97%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED+VKPPK++HH A GGIAGK+ KKVH
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDSVKPPKTSHH-AAGGIAGKSSKKVH 60

Query: 61 PGNVFAVSANSNS 73
          PG +F + A SNS
Sbjct: 61 PGTLFGLQATSNS 72

[Close]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match: A0A5A7T065 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002550 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 7.18e-28
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLED--TVKPPKSAHHHAGGGIAGKACKK 60
          MSSMGA+CARVYVM+KK EEKL+RMEQER+GR ED  +VKPPK+AHH  GGGIAGK+ KK
Sbjct: 1  MSSMGASCARVYVMKKKAEEKLQRMEQERSGRREDNNSVKPPKTAHH-GGGGIAGKSSKK 60

Query: 61 VHPGNVFAVSANSNS 73
          VHPG VF V   SNS
Sbjct: 61 VHPGTVFGVPPTSNS 74

[Close]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match: A0A7J6I0D6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.27e-10
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
          MSS+GA+CA VYVM+K+ +EK+ RME+ERA +  +T +  K+A   H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPGN 63
          VHPGN
Sbjct: 61 VHPGN 65

[Close]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match: A0A7J6E0F2 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.67e-09
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAH--HHAGGGIAGKACKK 60
          MSS+GA+CA VYVM+K+ +EK+ RME+ERA +  +T +  K+A   H  GGG A    KK
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMLRMEEERARKSGETHQDSKAATRGHGGGGGSALGKGKK 60

Query: 61 VHPGN 63
          VHPGN
Sbjct: 61 VHPGN 65

[Close]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.61e-09
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 0


Query: 1  MSSMGAACARVYVMRKKTEEKLKRMEQERAGRLEDTVKPPKSAHHHAGGGIAGKACKKVH 60
          MSS+GA+CA +YVMRK+ +EKLKRME+ER  + E +V+  K +     G   G++ KKVH
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVS-----GSTIGRS-KKVH 60

Query: 61 PGNVFAVSANS 71
          PG  F  S NS
Sbjct: 61 PG--FFTSQNS 63

The following BLAST results are available for this feature:

BLAST of Csor.00g059500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g059500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604014.1	6.78e-44	100.00	hypothetical protein SDJN03_04623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN48780.1	8.46e-29	73.97	hypothetical protein Csa_002943 [Cucumis sativus]	[more]
KAA0036273.1	1.48e-27	74.67	hypothetical protein E6C27_scaffold18G00720 [Cucumis melo var. makuwa] >TYK12667...	[more]
KAG6594855.1	3.10e-24	68.49	hypothetical protein SDJN03_11408, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF4400541.1	1.50e-09	53.85	hypothetical protein G4B88_023334 [Cannabis sativa]	[more]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGB8	4.09e-29	73.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500720 PE=4 SV=1	[more]
A0A5A7T065	7.18e-28	74.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A7J6I0D6	7.27e-10	53.85	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_023334 PE=4 SV=1	[more]
A0A7J6E0F2	1.67e-09	53.85	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020454 PE=4 SV=1	[more]
A0A2N9EUS9	8.61e-09	50.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1	[more]

BLAST of Csor.00g059500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 8..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..42
None	No IPR available	PANTHER	PTHR34950:SF2	BNAC01G00560D PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR34950	OS04G0457400 PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g059500.m01	Csor.00g059500.m01	mRNA