MELO3C005744.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C005744.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Unknown protein
Location	chr09: 23494152 .. 23495254 (+)
RNA-Seq Expression	MELO3C005744.jh1
Synteny	MELO3C005744.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCTGTCAAATCCACTTTGTTGAAGAGTATAAAGCCCCTCCAGACTTAGCTATGCATTAACCAAGCAGTTCCTTCCGACCATCTTTTGAGAGTCCTAACACAAAAAGCTTCAACTTTTATTACATCAATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGGCAAGTTTGATTTTCTTCGTTCTAATTTCTCCGCCATTGTGAAATTAAATTTACCAAGTGTTGGATCATTTAATTACTAGCCGAAACCTCAGTTGTGTACGTTTAGTTTTAGTATGTTAACAACAGCTTGTGATAGTACTAACTGTTGATTTTAATTGATTGGATCTGGTGCATTGTCGCTGGTATCTCTTCGTAAATTTTCTTTTTATTTTGATTTCTATCCCTCTTTTGTTTCATAATGTAATTATTTGGCCTGGATTTGCAGAAATGAAGGGAGAGAAGGAAGGTGAATCGATTGAAGGAACAGTGCGGCTGCCTCTAAACTAGCTGCTACTACTACTATGAATTTGCGTAAAGCAGAAATAAAGATACACAATGTTGGATAAAGATAATAATTTATGAGACTACTGTACCTATTTCTTTCTTGTTTAAAATAAAACTTCTGTATTCCTACCCTCCTTATCGATATAAAAAGTACATGCTATCCGACACACATAATCACACAAATGTTATGCTATCTTTTAACCGAGCTTGTTCCTTGCATCAAAAAACAAATCAACATATCCAGTCTTACTGATTTGCAAATTCAAAAATAATTTAATGGATAAGACACTAATTAACACTTGAA

mRNA sequence

CGCTGTCAAATCCACTTTGTTGAAGAGTATAAAGCCCCTCCAGACTTAGCTATGCATTAACCAAGCAGTTCCTTCCGACCATCTTTTGAGAGTCCTAACACAAAAAGCTTCAACTTTTATTACATCAATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGAAATGAAGGGAGAGAAGGAAGGTGAATCGATTGAAGGAACAGTGCGGCTGCCTCTAAACTAGCTGCTACTACTACTATGAATTTGCGTAAAGCAGAAATAAAGATACACAATGTTGGATAAAGATAATAATTTATGAGACTACTGTACCTATTTCTTTCTTGTTTAAAATAAAACTTCTGTATTCCTACCCTCCTTATCGATATAAAAAGTACATGCTATCCGACACACATAATCACACAAATGTTATGCTATCTTTTAACCGAGCTTGTTCCTTGCATCAAAAAACAAATCAACATATCCAGTCTTACTGATTTGCAAATTCAAAAATAATTTAATGGATAAGACACTAATTAACACTTGAA

Coding sequence (CDS)

ATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGAAATGA

Protein sequence

MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK

Homology

[Close]

BLAST of MELO3C005744.jh1 vs. NCBI nr
Match: XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])

HSP 1 Score: 241 bits (615), Expect = 2.38e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
           MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
           SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117

[Close]

BLAST of MELO3C005744.jh1 vs. NCBI nr
Match: KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])

HSP 1 Score: 177 bits (449), Expect = 3.27e-55
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
          MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGL 86
          SANDSHCKGSGSKKKKEHQVKKEG +
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGEM 86

[Close]

BLAST of MELO3C005744.jh1 vs. NCBI nr
Match: XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])

HSP 1 Score: 169 bits (427), Expect = 9.18e-52
Identity = 93/116 (80.17%), Postives = 95/116 (81.90%), Query Frame = 0


Query: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
           MA  QC KPADH     QQKHDQQH HHCFGGHVSDKIKGVF KGHHH QA  AS  VHH
Sbjct: 1   MASLQCNKPADHD----QQKHDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPLASAPVHH 60

Query: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116
           SAN SHCK +GSKKKKEH   KEGGLLHKIK+AFSDHSSDSSDSENEC KPHHNKK
Sbjct: 61  SANASHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKK 110

[Close]

BLAST of MELO3C005744.jh1 vs. NCBI nr
Match: XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])

HSP 1 Score: 106 bits (265), Expect = 4.13e-27
Identity = 74/119 (62.18%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGH-HHDQAHPASGAVH 60
           MA  QC+KPAD  H Q+Q KHDQ H   CFG HVSDKIKGVF KGH HH QA  A  A H
Sbjct: 1   MASLQCSKPADQQHSQNQ-KHDQGH---CFG-HVSDKIKGVF-KGHGHHGQAPGA--APH 60

Query: 61  HSAN-DSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
           HS N +++   S S K+KE    K+G LLHKIK+AFSDHSSDSSDS+NE HK H   KK
Sbjct: 61  HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111

[Close]

BLAST of MELO3C005744.jh1 vs. NCBI nr
Match: KAB2620787.1 (hypothetical protein D8674_039545 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 52.0 bits (123), Expect = 1.24e-05
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 34  VSDKIKGVFVKGHH--HDQAHP------ASGAVHHSANDSHCKGSGSKKKKEHQVKKEGG 93
           +  K+ G F+KGHH  H  +H        +G  HH+ N + C G  +KKK EH+ KK GG
Sbjct: 29  LGQKVSG-FLKGHHGSHSSSHTQCSATATNGQGHHATNSTACHGR-TKKKGEHRNKKTGG 88

Query: 94  ---LLHKIKEAFSDHSSDSSDSENE 107
              LL KIK+  S HSS SSDSE++
Sbjct: 89  GRNLLQKIKDGISGHSSSSSDSESD 111

[Close]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match: A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.15e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
           MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
           SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK
Sbjct: 61  SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117

[Close]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 1.58e-55
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
          MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60

Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGL 86
          SANDSHCKGSGSKKKKEHQVKKEG +
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGEM 86

[Close]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 2.00e-27
Identity = 74/119 (62.18%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 1   MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGH-HHDQAHPASGAVH 60
           MA  QC+KPAD  H Q+Q KHDQ H   CFG HVSDKIKGVF KGH HH QA  A  A H
Sbjct: 1   MASLQCSKPADQQHSQNQ-KHDQGH---CFG-HVSDKIKGVF-KGHGHHGQAPGA--APH 60

Query: 61  HSAN-DSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
           HS N +++   S S K+KE    K+G LLHKIK+AFSDHSSDSSDS+NE HK H   KK
Sbjct: 61  HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111

[Close]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match: A0A5N5H0E0 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039545 PE=4 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.00e-06
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 34  VSDKIKGVFVKGHH--HDQAHP------ASGAVHHSANDSHCKGSGSKKKKEHQVKKEGG 93
           +  K+ G F+KGHH  H  +H        +G  HH+ N + C G  +KKK EH+ KK GG
Sbjct: 29  LGQKVSG-FLKGHHGSHSSSHTQCSATATNGQGHHATNSTACHGR-TKKKGEHRNKKTGG 88

Query: 94  ---LLHKIKEAFSDHSSDSSDSENE 107
              LL KIK+  S HSS SSDSE++
Sbjct: 89  GRNLLQKIKDGISGHSSSSSDSESD 111

[Close]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match: A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.19e-06
Identity = 41/103 (39.81%), Postives = 52/103 (50.49%), Query Frame = 0


Query: 25  HDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH--------------SANDSHCKGS 84
           HDH   GGH      G       H    PA+  + H              S N  HCK  
Sbjct: 435 HDHGQAGGHGHGPAGG-------HGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAG 494

Query: 85  GSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHH 113
           GS+KK  H+  KEGG L+KIK+AFSDHS D+SDS+++C +  H
Sbjct: 495 GSRKKGHHK-NKEGGFLNKIKDAFSDHS-DNSDSDDDCRRGRH 528

The following BLAST results are available for this feature:

BLAST of MELO3C005744.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437383.1	2.38e-80	100.00	PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo]	[more]
KAA0042689.1	3.27e-55	97.67	uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_038875375.1	9.18e-52	80.17	uncharacterized protein LOC120067846 [Benincasa hispida]	[more]
XP_022146004.1	4.13e-27	62.18	uncharacterized protein LOC111015315 [Momordica charantia]	[more]
KAB2620787.1	1.24e-05	44.71	hypothetical protein D8674_039545 [Pyrus ussuriensis x Pyrus communis]	[more]

BLAST of MELO3C005744.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AUH3	1.15e-80	100.00	uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=...	[more]
A0A5A7TMV4	1.58e-55	97.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CWW2	2.00e-27	62.18	uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5N5H0E0	6.00e-06	44.71	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]
A0A6J1H399	8.19e-06	39.81	glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C005744.jh1.t1	MELO3C005744.jh1.t1	mRNA