Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCTGTCAAATCCACTTTGTTGAAGAGTATAAAGCCCCTCCAGACTTAGCTATGCATTAACCAAGCAGTTCCTTCCGACCATCTTTTGAGAGTCCTAACACAAAAAGCTTCAACTTTTATTACATCAATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGGCAAGTTTGATTTTCTTCGTTCTAATTTCTCCGCCATTGTGAAATTAAATTTACCAAGTGTTGGATCATTTAATTACTAGCCGAAACCTCAGTTGTGTACGTTTAGTTTTAGTATGTTAACAACAGCTTGTGATAGTACTAACTGTTGATTTTAATTGATTGGATCTGGTGCATTGTCGCTGGTATCTCTTCGTAAATTTTCTTTTTATTTTGATTTCTATCCCTCTTTTGTTTCATAATGTAATTATTTGGCCTGGATTTGCAGAAATGAAGGGAGAGAAGGAAGGTGAATCGATTGAAGGAACAGTGCGGCTGCCTCTAAACTAGCTGCTACTACTACTATGAATTTGCGTAAAGCAGAAATAAAGATACACAATGTTGGATAAAGATAATAATTTATGAGACTACTGTACCTATTTCTTTCTTGTTTAAAATAAAACTTCTGTATTCCTACCCTCCTTATCGATATAAAAAGTACATGCTATCCGACACACATAATCACACAAATGTTATGCTATCTTTTAACCGAGCTTGTTCCTTGCATCAAAAAACAAATCAACATATCCAGTCTTACTGATTTGCAAATTCAAAAATAATTTAATGGATAAGACACTAATTAACACTTGAA
mRNA sequence
CGCTGTCAAATCCACTTTGTTGAAGAGTATAAAGCCCCTCCAGACTTAGCTATGCATTAACCAAGCAGTTCCTTCCGACCATCTTTTGAGAGTCCTAACACAAAAAGCTTCAACTTTTATTACATCAATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGAAATGAAGGGAGAGAAGGAAGGTGAATCGATTGAAGGAACAGTGCGGCTGCCTCTAAACTAGCTGCTACTACTACTATGAATTTGCGTAAAGCAGAAATAAAGATACACAATGTTGGATAAAGATAATAATTTATGAGACTACTGTACCTATTTCTTTCTTGTTTAAAATAAAACTTCTGTATTCCTACCCTCCTTATCGATATAAAAAGTACATGCTATCCGACACACATAATCACACAAATGTTATGCTATCTTTTAACCGAGCTTGTTCCTTGCATCAAAAAACAAATCAACATATCCAGTCTTACTGATTTGCAAATTCAAAAATAATTTAATGGATAAGACACTAATTAACACTTGAA
Coding sequence (CDS)
ATGGCATACCAACAATGCACCAAGCCAGCTGATCATGCGCATGGCCAGCACCAGCAGAAGCACGACCAACAACATGATCACCATTGCTTCGGCGGCCATGTCTCCGACAAGATCAAGGGCGTCTTCGTCAAAGGCCACCATCACGACCAGGCTCATCCGGCATCGGGCGCAGTGCACCACTCTGCCAACGACAGCCACTGCAAGGGAAGTGGGTCAAAGAAGAAGAAGGAACACCAAGTGAAAAAGGAAGGAGGTTTGTTGCATAAGATCAAGGAAGCCTTTTCTGACCATAGCAGTGATAGTAGTGACAGTGAAAATGAATGTCACAAACCACATCACAATAAAAAGAAATGA
Protein sequence
MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHHSANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK
Homology
BLAST of MELO3C005744.jh1 vs. NCBI nr
Match:
XP_008437383.1 (PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo])
HSP 1 Score: 241 bits (615), Expect = 2.38e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
BLAST of MELO3C005744.jh1 vs. NCBI nr
Match:
KAA0042689.1 (uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK06092.1 uncharacterized protein E5676_scaffold376G001930 [Cucumis melo var. makuwa])
HSP 1 Score: 177 bits (449), Expect = 3.27e-55
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGL 86
SANDSHCKGSGSKKKKEHQVKKEG +
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGEM 86
BLAST of MELO3C005744.jh1 vs. NCBI nr
Match:
XP_038875375.1 (uncharacterized protein LOC120067846 [Benincasa hispida])
HSP 1 Score: 169 bits (427), Expect = 9.18e-52
Identity = 93/116 (80.17%), Postives = 95/116 (81.90%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
MA QC KPADH QQKHDQQH HHCFGGHVSDKIKGVF KGHHH QA AS VHH
Sbjct: 1 MASLQCNKPADHD----QQKHDQQH-HHCFGGHVSDKIKGVF-KGHHHGQAPLASAPVHH 60
Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKK 116
SAN SHCK +GSKKKKEH KEGGLLHKIK+AFSDHSSDSSDSENEC KPHHNKK
Sbjct: 61 SANASHCKPTGSKKKKEHHKNKEGGLLHKIKDAFSDHSSDSSDSENECDKPHHNKK 110
BLAST of MELO3C005744.jh1 vs. NCBI nr
Match:
XP_022146004.1 (uncharacterized protein LOC111015315 [Momordica charantia])
HSP 1 Score: 106 bits (265), Expect = 4.13e-27
Identity = 74/119 (62.18%), Postives = 83/119 (69.75%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGH-HHDQAHPASGAVH 60
MA QC+KPAD H Q+Q KHDQ H CFG HVSDKIKGVF KGH HH QA A A H
Sbjct: 1 MASLQCSKPADQQHSQNQ-KHDQGH---CFG-HVSDKIKGVF-KGHGHHGQAPGA--APH 60
Query: 61 HSAN-DSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
HS N +++ S S K+KE K+G LLHKIK+AFSDHSSDSSDS+NE HK H KK
Sbjct: 61 HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111
BLAST of MELO3C005744.jh1 vs. NCBI nr
Match:
KAB2620787.1 (hypothetical protein D8674_039545 [Pyrus ussuriensis x Pyrus communis])
HSP 1 Score: 52.0 bits (123), Expect = 1.24e-05
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0
Query: 34 VSDKIKGVFVKGHH--HDQAHP------ASGAVHHSANDSHCKGSGSKKKKEHQVKKEGG 93
+ K+ G F+KGHH H +H +G HH+ N + C G +KKK EH+ KK GG
Sbjct: 29 LGQKVSG-FLKGHHGSHSSSHTQCSATATNGQGHHATNSTACHGR-TKKKGEHRNKKTGG 88
Query: 94 ---LLHKIKEAFSDHSSDSSDSENE 107
LL KIK+ S HSS SSDSE++
Sbjct: 89 GRNLLQKIKDGISGHSSSSSDSESD 111
BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match:
A0A1S3AUH3 (uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=4 SV=1)
HSP 1 Score: 241 bits (615), Expect = 1.15e-80
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7TMV4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001930 PE=4 SV=1)
HSP 1 Score: 177 bits (449), Expect = 1.58e-55
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH
Sbjct: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH 60
Query: 61 SANDSHCKGSGSKKKKEHQVKKEGGL 86
SANDSHCKGSGSKKKKEHQVKKEG +
Sbjct: 61 SANDSHCKGSGSKKKKEHQVKKEGEM 86
BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match:
A0A6J1CWW2 (uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015315 PE=4 SV=1)
HSP 1 Score: 106 bits (265), Expect = 2.00e-27
Identity = 74/119 (62.18%), Postives = 83/119 (69.75%), Query Frame = 0
Query: 1 MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGH-HHDQAHPASGAVH 60
MA QC+KPAD H Q+Q KHDQ H CFG HVSDKIKGVF KGH HH QA A A H
Sbjct: 1 MASLQCSKPADQQHSQNQ-KHDQGH---CFG-HVSDKIKGVF-KGHGHHGQAPGA--APH 60
Query: 61 HSAN-DSHCKGSGSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHHNKKK 117
HS N +++ S S K+KE K+G LLHKIK+AFSDHSSDSSDS+NE HK H KK
Sbjct: 61 HSTNVNANANASVSHKEKEQHKNKDGNLLHKIKDAFSDHSSDSSDSDNEGHKAHRKSKK 111
BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match:
A0A5N5H0E0 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_039545 PE=4 SV=1)
HSP 1 Score: 52.0 bits (123), Expect = 6.00e-06
Identity = 38/85 (44.71%), Postives = 50/85 (58.82%), Query Frame = 0
Query: 34 VSDKIKGVFVKGHH--HDQAHP------ASGAVHHSANDSHCKGSGSKKKKEHQVKKEGG 93
+ K+ G F+KGHH H +H +G HH+ N + C G +KKK EH+ KK GG
Sbjct: 29 LGQKVSG-FLKGHHGSHSSSHTQCSATATNGQGHHATNSTACHGR-TKKKGEHRNKKTGG 88
Query: 94 ---LLHKIKEAFSDHSSDSSDSENE 107
LL KIK+ S HSS SSDSE++
Sbjct: 89 GRNLLQKIKDGISGHSSSSSDSESD 111
BLAST of MELO3C005744.jh1 vs. ExPASy TrEMBL
Match:
A0A6J1H399 (glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111459722 PE=4 SV=1)
HSP 1 Score: 53.9 bits (128), Expect = 8.19e-06
Identity = 41/103 (39.81%), Postives = 52/103 (50.49%), Query Frame = 0
Query: 25 HDHHCFGGHVSDKIKGVFVKGHHHDQAHPASGAVHH--------------SANDSHCKGS 84
HDH GGH G H PA+ + H S N HCK
Sbjct: 435 HDHGQAGGHGHGPAGG-------HGHCMPANPNIGHCQPANPNVGHCQPASPNVGHCKAG 494
Query: 85 GSKKKKEHQVKKEGGLLHKIKEAFSDHSSDSSDSENECHKPHH 113
GS+KK H+ KEGG L+KIK+AFSDHS D+SDS+++C + H
Sbjct: 495 GSRKKGHHK-NKEGGFLNKIKDAFSDHS-DNSDSDDDCRRGRH 528
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008437383.1 | 2.38e-80 | 100.00 | PREDICTED: uncharacterized protein LOC103482815 [Cucumis melo] | [more] |
| KAA0042689.1 | 3.27e-55 | 97.67 | uncharacterized protein E6C27_scaffold44G001870 [Cucumis melo var. makuwa] >TYK0... | [more] |
| XP_038875375.1 | 9.18e-52 | 80.17 | uncharacterized protein LOC120067846 [Benincasa hispida] | [more] |
| XP_022146004.1 | 4.13e-27 | 62.18 | uncharacterized protein LOC111015315 [Momordica charantia] | [more] |
| KAB2620787.1 | 1.24e-05 | 44.71 | hypothetical protein D8674_039545 [Pyrus ussuriensis x Pyrus communis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3AUH3 | 1.15e-80 | 100.00 | uncharacterized protein LOC103482815 OS=Cucumis melo OX=3656 GN=LOC103482815 PE=... | [more] |
| A0A5A7TMV4 | 1.58e-55 | 97.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A6J1CWW2 | 2.00e-27 | 62.18 | uncharacterized protein LOC111015315 OS=Momordica charantia OX=3673 GN=LOC111015... | [more] |
| A0A5N5H0E0 | 6.00e-06 | 44.71 | Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867... | [more] |
| A0A6J1H399 | 8.19e-06 | 39.81 | glycine-rich cell wall structural protein 1-like OS=Cucurbita moschata OX=3662 G... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
