CSPI07G16690.1 (mRNA) Cucumber (PI 183967) v1

Overview


Name	CSPI07G16690.1
Type	mRNA
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	39S ribosomal protein L46, mitochondrial-like isoform X2
Location	Chr7: 15261946 .. 15265060 (-)
Sequence length	782
RNA-Seq Expression	CSPI07G16690.1
Synteny	CSPI07G16690.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATTCTCAGGTGAACTCTTTGCGCCTTCTTCAATGGTAGCTTATGAATGCGTCTTCAGTATCGGTTATACCTCTTCTTAGAACTTCAATGCAAGTTCCAGTGTCATTTCCTTCAAAATTTATTTTATGGTTAATGAATTGCTGTTTCTTTTTTCTCTAATCGGTTACGTGTGATTCTCTCAAATTCAGAATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGATCTATGCATTTACGGACTTCCAGTACGTTGTTTTTGCTTGTGTTTTTTTTTTTTTTTACTGAAAGAGTTGCTGTATCTTGACTTGATTTTCATCGGGATAGGGAGTATTTCTTATTTATTTCTTATTTATTTCTTATTTTGATCGTTCAGCTTTGCTCGATTGTCTTCAGGTTTAGGTGGCAACAGCAATATCGACGCAAATATCCTGACGAATTTTTAAATAAAGCTGATGGCAGGTATATTTTCTATCATTTTGTTTGGCTACGTCAAGTATAGAGTTTTGGTTTATGCATTGTTTTAACTTGACTTTCTCTCTGAACTCCTTCAATTCTTGTGACATTTTAAAGCATCAAGTTCTAGAGAGTGCTCTTTTGATCTATTTTTTCATTTTGTCAAACATCATTATTCACAACAATGTGATATTAGTTATCATATTTTAGCTTATTTTATTATTAAAAGTGCAAGAAATTTTTTTTGTGGGCTACTCTACTAGGAGGGCACCAGTTGATTCCAAACTTTGAGCAAGAAAATTTTGTGTAAGTAAAGAACACCTATGTTAGTTAACTTTAAGTACCAATGTAATTTAATTATCAAACGGACGACATTGGCATCCCAATTGAGGAGAGTTGGTTTTAGTCTCTAATTACAATAGATTGCAAATTTCTAATTTGATTTGTTACATTGAGGTAATAACTTTTTCGTTCTCTTGGAAGTTGGAACTAACAACTTTTGGCACCTAAAGAAATTAACGAAAGTTTCCAGTTATTGGTAAAGCTAAATTTTATGACTTCCTTGGATTGGAGCCTTCTAAGATGAAGCTTTATGTTGATAAATCTTAGGGCTTTCTTTTGTAGTGAGCTTAGTATAATGTAGCTTTTGGGTGATCAATTTATATTTTCTTTGAATTATTTGGATGGATTATCTGGGTGGAGGATGACCAACTCTGTAACACGTTTTTCCTTAATTATCTAAATTCATGTTTATTTCAAATGGATGGCTGCGGTACTTGAATTTCGTATATATTACTACCACTATAGCGCAATGTCATATGCCCATAGGCCTTCAAAATATTTATATTTTGAAGGCAATCTTATCTCATGTTACTATCAATTTTCAGTTAGCTAATTGTTGGAGCTTATTGTCCAAACACTGGATAAATGAGAATACATGATTTTTCTTTCTTTTGGCAATTGTATGACTCAAGCTGCTGATAACAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTATGCAATCTCTTCTTTCTTTCTTTCTTTCTTCTTCTTTTTTTTTCCTTCTCTCTCCTTCTCTCTTTAATATAACTTAGAATTGATTGAATGAAGGTTTCTTTATCCATGCAACGTCACTATTGAGTGAAAAGAAACACAATCTATGAGTTTTTGTTCTTGTTCATGCTAAATAATCTTCACTGTTGTGACTTTTCTTCCCTGAATTTTTTGTGGCACCTTGCAGTTCTTTTGTGTTTGTTTGAACATATTTTCTCGTTTCTTATATAAAAGAAAAAAAACAAAATAACACTTTTATATCCCAATATTACACAGTGCATATCAAGCTCATGTGCATGCTGCTCTGTTAGGTGCTTTCAACTCATTTATTTTAGTGAAGCGCTCTTATATCTTTAAAACCATAGTTCTACTTAGTTTCATGATGACTGATGAAACTTGTTTTAGCCCTGGGGAAATCCCTTTCATTTGATTCATGATAAAATTTCCAGATATCGTTGGATATCTAATAAATGTTAAAATTGTATTGCTTTGTTTGTATATCAGGCTATTGATATCTTTTCTACTCTACAACTGAAGTTTCTAGATGGTGTCTCTTAAATACAGAGACTCCCTTTTCTCGCGTTTTATTTAGAGTTCAGGCCATCTGATCCAGGTCATTAGTTTGCTACATTTTAAGCTCGAAATTGAGATTTACATTCTGGTTACTGGAATTGTTCTCTCCTTCTAGGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAAGTAAGAGTTGGCTACTGGTACTCTTCAGTTCTATTTTTCATCAATTTTACCCTTCTAACTTTTAAGTTCTACAGTGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCAGTTCCAACTTTGAAGGTATATGTCTTCTACTAAAAAATTTATATCATATAATAACTTCAAGCATCGGCAATTGGAATTGGTTGAAATATCATTTTGGCCTCTTTACTTTGGGTTTTGTTATGCTTTCGTTAACGTATTTTCAATAAATCTTAAATTTAATCATTTAGAGTTATTTTTAAACACTTGAAAGTGTAGGAACTAAAATGGAATAGAACCCAAATTACATGAATGAATCCAAAGTTTATACATGAATGCTGAGTATTTAGTACAATGAGGTCATTTATGTGTTGGCTTAAATGAAATCTCTCCTGTTTGCCAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATAAATTTGATATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATCATCATCAGTTGA

mRNA sequence

GTCATTCTCAGGTGAACTCTTTGCGCCTTCTTCAATGGTAGCTTATGAATGCGTCTTCAGTATCGGTTATACCTCTTCTTAGAACTTCAATAATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGATCTATGCATTTACGGACTTCCAGTTTAGGTGGCAACAGCAATATCGACGCAAATATCCTGACGAATTTTTAAATAAAGCTGATGGCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCAGTTCCAACTTTGAAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATAAATTTGATATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATCATCATCAGTTGA

Coding sequence (CDS)

ATGAATGCGTCTTCAGTATCGGTTATACCTCTTCTTAGAACTTCAATAATGCAGAGATCGTTAAATTTTGCCGGTCAGCTCGTGAAGAGGCGAGGATTTTCGACGAATTCTGAGAAAATTGTAGCGGCTGTACTGTTCGAGAGGCTGCCAGTCGTGATTCCGAAGATTGACCCCGTGATCTATGCATTTACGGACTTCCAGTTTAGGTGGCAACAGCAATATCGACGCAAATATCCTGACGAATTTTTAAATAAAGCTGATGGCAGGGGAAAAGGTGACTACCAAATTGATTATGTTCCAGCTCCACGGATTACTGAAGCTGACAAAACAAACGACAGGAAGTCACTGAAAAGAGCACTTGACAGAAGACTTTATCTTCTTCTCTATGGTCCCTCCATTGGGGCACCTGATGAGAAACCCATCTGGCACTTTCCAGAAAAAGCTTACGAGACCGAGGAGACATTACGTAAATGTGCAGAGTCTGCCTTAAAGTCCGTCCTTGGAGATCTTTCTCAAACATATTTTGTTGGTAATGCTCCAATGGGTCATATGGTTGTACCACCTACAGAAACTGCACCAGTTCCAACTTTGAAGAGATTCTTTTTTAAGTCTCAAGTGGTTGCAGCCGATAAATTTGATATTGGGAAATGTGAAGATTTTGTATGGGTTACAAAGGATGAATTGTTGGAGCATTTTCCTGATCAAGCTGAATTTTTCAAGAAGATCATCATCAGTTGA

Protein sequence

MNASSVSVIPLLRTSIMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS*

Homology

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BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot
Match: Q9EQI8 (39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.8e-15
Identity = 51/136 (37.50%), Postives = 71/136 (52.21%), Query Frame = 0


Query: 96  IDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETL 155
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-VLLVREKLGDQD---VWMLPQVEWQPGETL 186

Query: 156 RKCAESALKSVLGDLSQTYFVGNAPMGH---MVVPPTETAPVPTLKRFFFKSQVVAADKF 215
           R  AE  L ++  +  +  F+GNAP GH         +T     +K FFFK+ ++  D  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFV 246

Query: 216 DIGKCEDFVWVTKDEL 229
             GK    VW +K+EL
Sbjct: 247 QAGKKSRHVWASKEEL 258

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot
Match: P36528 (54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=MRPL17 PE=1 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 1.0e-14
Identity = 59/166 (35.54%), Postives = 80/166 (48.19%), Query Frame = 0


Query: 82  FLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPI 141
           F N    + K D     +P  RITEAD++ND KSL+R L R LYLL+        D+   
Sbjct: 124 FSNNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLV-------KDKSGT 183

Query: 142 WHFPEKAYETE-ETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPTLKRF 201
           W FP      E + L   AE+ LK + GD   T+ V   P+G +      TA       F
Sbjct: 184 WKFPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIGVLQDERNRTA------EF 243

Query: 202 FFKSQVVAADKFDI-----GKCEDFVWVTKDELLEHFPDQAEFFKK 242
             KS ++A  KFD+        EDF W+TK E+ E+ P   ++F K
Sbjct: 244 IVKSHILAG-KFDLVASKNDAFEDFAWLTKGEISEYVP--KDYFNK 273

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot
Match: Q9H2W6 (39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 103 RITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESA 162
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQAEWQPGETLRGTAERT 195

Query: 163 LKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT---LKRFFFKSQVVAADKFDIGKCED 222
           L ++  +  +  F+GNAP GH      +     +    K FFFK+ ++  D    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 223 FVWVTKDEL 229
            VWVTKDEL
Sbjct: 256 HVWVTKDEL 260

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot
Match: Q5RBU2 (39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-14
Identity = 51/129 (39.53%), Postives = 67/129 (51.94%), Query Frame = 0


Query: 103 RITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESA 162
           RITEAD+ NDR SL R LDR L +LL     G  D   +W  P+  ++  ETLR  AE  
Sbjct: 136 RITEADEKNDRTSLNRKLDRNL-VLLVREKFGDQD---VWILPQTEWQPGETLRGTAERT 195

Query: 163 LKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT---LKRFFFKSQVVAADKFDIGKCED 222
           L ++  +  +  F+GNAP GH      +     +    K FFFK+ ++  D    G    
Sbjct: 196 LATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFSQAGNKGH 255

Query: 223 FVWVTKDEL 229
            VWVTKDEL
Sbjct: 256 HVWVTKDEL 260

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot
Match: Q5RK00 (39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl46 PE=2 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-14
Identity = 51/136 (37.50%), Postives = 70/136 (51.47%), Query Frame = 0


Query: 96  IDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETL 155
           + + P  R TEADK NDR SL R LDR L +LL    +G  D   +W  P+  ++  ETL
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNL-ILLVREKLGDQD---LWMLPQVEWQPGETL 186

Query: 156 RKCAESALKSVLGDLSQTYFVGNAPMGH---MVVPPTETAPVPTLKRFFFKSQVVAADKF 215
           R  AE  L ++  +  +  F+GNAP GH          T     +K FFFK+ ++  D  
Sbjct: 187 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFV 246

Query: 216 DIGKCEDFVWVTKDEL 229
             GK    VW +K+EL
Sbjct: 247 QTGKKGRHVWASKEEL 258

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL
Match: A0A0A0KAL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391280 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 4.9e-129
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR
Sbjct: 44  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 103

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 104 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 163

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 164 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 223

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 224 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL
Match: A0A1S4DYN0 (54S ribosomal protein L17, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=LOC103492711 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122
Identity = 215/229 (93.89%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLP+VIPKIDPV+YAFT+F+FRWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFL+KAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVA DKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL
Match: A0A5D3D407 (54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002200 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122
Identity = 215/229 (93.89%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLP+VIPKIDPV+YAFT+F+FRWQQQYRR
Sbjct: 1   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 60

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFL+KAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 61  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 120

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 121 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 180

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVA DKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 181 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 229

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL
Match: A0A1S3BS77 (54S ribosomal protein L17, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103492711 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122
Identity = 215/229 (93.89%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLP+VIPKIDPV+YAFT+F+FRWQQQYRR
Sbjct: 7   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 66

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFL+KAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 67  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 126

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 127 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 186

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVA DKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 187 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

[Close]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL
Match: A0A6J1JQ58 (39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488836 PE=4 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 3.9e-118
Identity = 208/245 (84.90%), Postives = 229/245 (93.47%), Query Frame = 0


Query: 1   MNASSVSVIPLLRTSIMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVI 60
           MN  ++SV P+LR SIMQRS + A QL KRRGFSTNSEKIVA+VLFERLPVVIPKIDPV+
Sbjct: 1   MNGCTISVQPVLRASIMQRSFSLASQLAKRRGFSTNSEKIVASVLFERLPVVIPKIDPVV 60

Query: 61  YAFTDFQFRWQQQYRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRAL 120
           YAF +F+FRWQQQYRR+YPDEFL+KA+ RGKGDYQIDYVPAPRITEADKTNDRKSL+RAL
Sbjct: 61  YAFQEFKFRWQQQYRRRYPDEFLDKANARGKGDYQIDYVPAPRITEADKTNDRKSLQRAL 120

Query: 121 DRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAP 180
           DRRLYLLLYG SIGAPD+KPIWHFPEKAYETEETLRKCAESAL+SVLG LS TYFVGNAP
Sbjct: 121 DRRLYLLLYGASIGAPDKKPIWHFPEKAYETEETLRKCAESALESVLGGLSHTYFVGNAP 180

Query: 181 MGHMVVPPTETAPVPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFK 240
           M HMVVPPTETA VP+LKRFFFKSQV+A +KF+IGKCEDFVWVTKDEL+E+FPDQAEFFK
Sbjct: 181 MAHMVVPPTETAQVPSLKRFFFKSQVIATNKFNIGKCEDFVWVTKDELMEYFPDQAEFFK 240

Query: 241 KIIIS 246
           K+IIS
Sbjct: 241 KMIIS 245

[Close]

BLAST of CSPI07G16690.1 vs. NCBI nr
Match: XP_011659322.1 (39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 1.0e-136
Identity = 244/245 (99.59%), Postives = 245/245 (100.00%), Query Frame = 0


Query: 1   MNASSVSVIPLLRTSIMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVI 60
           MNASSVSVIPLLRTSIMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVI
Sbjct: 1   MNASSVSVIPLLRTSIMQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVI 60

Query: 61  YAFTDFQFRWQQQYRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRAL 120
           YAFTDFQFRWQQQYRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRAL
Sbjct: 61  YAFTDFQFRWQQQYRRKYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRAL 120

Query: 121 DRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAP 180
           DRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAP
Sbjct: 121 DRRLYLLLYGPSIGAPDEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAP 180

Query: 181 MGHMVVPPTETAPVPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFK 240
           MGHMVVPPTETAPVPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFK
Sbjct: 181 MGHMVVPPTETAPVPTLKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFK 240

Query: 241 KIIIS 246
           K+IIS
Sbjct: 241 KMIIS 245

[Close]

BLAST of CSPI07G16690.1 vs. NCBI nr
Match: KGN44851.1 (hypothetical protein Csa_016821 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR
Sbjct: 44  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 103

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 104 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 163

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 164 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 223

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 224 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 272

[Close]

BLAST of CSPI07G16690.1 vs. NCBI nr
Match: XP_004148875.2 (54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR
Sbjct: 42  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 101

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 102 KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 161

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 162 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 221

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 222 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 270

[Close]

BLAST of CSPI07G16690.1 vs. NCBI nr
Match: XP_011659323.1 (39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 470.3 bits (1209), Expect = 1.0e-128
Identity = 228/229 (99.56%), Postives = 229/229 (100.00%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR
Sbjct: 7   MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 66

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 67  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 126

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT
Sbjct: 127 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 186

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 187 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

[Close]

BLAST of CSPI07G16690.1 vs. NCBI nr
Match: XP_008451408.1 (PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis melo])

HSP 1 Score: 447.6 bits (1150), Expect = 7.0e-122
Identity = 215/229 (93.89%), Postives = 222/229 (96.94%), Query Frame = 0


Query: 17  MQRSLNFAGQLVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRR 76
           MQRSL+FA QLVKRRGFSTNSEKIVA VLFERLP+VIPKIDPV+YAFT+F+FRWQQQYRR
Sbjct: 7   MQRSLSFASQLVKRRGFSTNSEKIVANVLFERLPIVIPKIDPVVYAFTEFRFRWQQQYRR 66

Query: 77  KYPDEFLNKADGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 136
           KYPDEFL+KAD RGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP
Sbjct: 67  KYPDEFLDKADARGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAP 126

Query: 137 DEKPIWHFPEKAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAPVPT 196
           DEKPIWHFPEK YETEETLRKCAESALKSVLGDLS TYFVGNAPMGHMVVPPTETA VPT
Sbjct: 127 DEKPIWHFPEKVYETEETLRKCAESALKSVLGDLSHTYFVGNAPMGHMVVPPTETAQVPT 186

Query: 197 LKRFFFKSQVVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           LKRFFFKSQVVA DKFDIGKCEDFVWVTKDELLEHFPDQAEFFKK+IIS
Sbjct: 187 LKRFFFKSQVVATDKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKMIIS 235

[Close]

BLAST of CSPI07G16690.1 vs. TAIR 10
Match: AT1G14620.1 (decoy )

HSP 1 Score: 335.1 bits (858), Expect = 4.7e-92
Identity = 157/220 (71.36%), Postives = 184/220 (83.64%), Query Frame = 0


Query: 27  LVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRRKYPDEFLNKA 86
           L  RRGF T+S+KIVA+VLFERL VVIPK DP +YAF +F+F WQQQ+RR+YPDEFL+ A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 87  DGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPE 146
             R KG+YQ+DYVPAPRITEADK NDRKSL RALD++LYLL++G   GA  +KP+WHFPE
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPE 133

Query: 147 KAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAP-VPTLKRFFFKSQ 206
           K Y++E TLRKCAESALKSV+GDL+ TYFVGNAPM HM + PTE  P +P+ KRFFFK  
Sbjct: 134 KVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYKRFFFKCS 193

Query: 207 VVAADKFDIGKCEDFVWVTKDELLEHFPDQAEFFKKIIIS 246
           VVAA K+DI  CEDFVWVTKDELLE FP+QAEFF K+IIS
Sbjct: 194 VVAASKYDISNCEDFVWVTKDELLEFFPEQAEFFNKMIIS 233

[Close]

BLAST of CSPI07G16690.1 vs. TAIR 10
Match: AT1G14620.2 (decoy )

HSP 1 Score: 256.9 bits (655), Expect = 1.6e-68
Identity = 120/173 (69.36%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 27  LVKRRGFSTNSEKIVAAVLFERLPVVIPKIDPVIYAFTDFQFRWQQQYRRKYPDEFLNKA 86
           L  RRGF T+S+KIVA+VLFERL VVIPK DP +YAF +F+F WQQQ+RR+YPDEFL+ A
Sbjct: 14  LESRRGFCTSSDKIVASVLFERLRVVIPKPDPAVYAFQEFKFNWQQQFRRRYPDEFLDIA 73

Query: 87  DGRGKGDYQIDYVPAPRITEADKTNDRKSLKRALDRRLYLLLYGPSIGAPDEKPIWHFPE 146
             R KG+YQ+DYVPAPRITEADK NDRKSL RALD++LYLL++G   GA  +KP+WHFPE
Sbjct: 74  KNRAKGEYQMDYVPAPRITEADKNNDRKSLYRALDKKLYLLIFGKPFGATSDKPVWHFPE 133

Query: 147 KAYETEETLRKCAESALKSVLGDLSQTYFVGNAPMGHMVVPPTETAP-VPTLK 199
           K Y++E TLRKCAESALKSV+GDL+ TYFVGNAPM HM + PTE  P +P+ K
Sbjct: 134 KVYDSEPTLRKCAESALKSVVGDLTHTYFVGNAPMAHMAIQPTEEMPDLPSYK 186

The following BLAST results are available for this feature:

BLAST of CSPI07G16690.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9EQI8	7.8e-15	37.50	39S ribosomal protein L46, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl46 PE=1...	[more]
P36528	1.0e-14	35.54	54S ribosomal protein L17, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q9H2W6	1.7e-14	39.53	39S ribosomal protein L46, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL46 PE=1 ...	[more]
Q5RBU2	1.7e-14	39.53	39S ribosomal protein L46, mitochondrial OS=Pongo abelii OX=9601 GN=MRPL46 PE=2 ...	[more]
Q5RK00	2.3e-14	37.50	39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl46...	[more]

BLAST of CSPI07G16690.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAL5	4.9e-129	99.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G391280 PE=4 SV=1	[more]
A0A1S4DYN0	3.4e-122	93.89	54S ribosomal protein L17, mitochondrial isoform X2 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A5D3D407	3.4e-122	93.89	54S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BS77	3.4e-122	93.89	54S ribosomal protein L17, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=L...	[more]
A0A6J1JQ58	3.9e-118	84.90	39S ribosomal protein L46, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=...	[more]

BLAST of CSPI07G16690.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659322.1	1.0e-136	99.59	39S ribosomal protein L46, mitochondrial isoform X2 [Cucumis sativus]	[more]
KGN44851.1	1.0e-128	99.56	hypothetical protein Csa_016821 [Cucumis sativus]	[more]
XP_004148875.2	1.0e-128	99.56	54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis sativus]	[more]
XP_011659323.1	1.0e-128	99.56	39S ribosomal protein L46, mitochondrial isoform X3 [Cucumis sativus]	[more]
XP_008451408.1	7.0e-122	93.89	PREDICTED: 54S ribosomal protein L17, mitochondrial isoform X1 [Cucumis melo]	[more]

BLAST of CSPI07G16690.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14620.1	4.7e-92	71.36	decoy	[more]
AT1G14620.2	1.6e-68	69.36	decoy	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.79.10	Nucleoside Triphosphate Pyrophosphohydrolase	coord: 112..244 e-value: 9.4E-30 score: 105.1
None	No IPR available	PANTHER	PTHR13124:SF14	SUBFAMILY NOT NAMED	coord: 17..245
IPR040008	39S ribosomal protein L46, mitochondrial	PANTHER	PTHR13124	39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED	coord: 17..245

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI07G16690	CSPI07G16690	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G16690.1.cds7	CSPI07G16690.1.cds7	CDS
CSPI07G16690.1.cds6	CSPI07G16690.1.cds6	CDS
CSPI07G16690.1.cds5	CSPI07G16690.1.cds5	CDS
CSPI07G16690.1.cds4	CSPI07G16690.1.cds4	CDS
CSPI07G16690.1.cds3	CSPI07G16690.1.cds3	CDS
CSPI07G16690.1.cds2	CSPI07G16690.1.cds2	CDS
CSPI07G16690.1.cds1	CSPI07G16690.1.cds1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI07G16690.1.utr5p1	CSPI07G16690.1.utr5p1	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI07G16690.1	CSPI07G16690.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome