CSPI05G05640 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI05G05640
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr5: 5189531 .. 5189743 (-)
RNA-Seq Expression	CSPI05G05640
Synteny	CSPI05G05640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

mRNA sequence

ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Coding sequence (CDS)

ATGGATGTCTTCATTCCCGACGATTACGTCATTCGCCGTCGCATCGAGAAAAAACTCGCCGCCCAAGCCCCCGTCAAGACCAGGCACCCACACCCCGCCGATCAACGGCCGAGGAATTCCGACAAGGAAAAAGAAGCTCCCGCAAAAACTGGATTATTCCGGTTCACCGCCACCGGCGCCGACAATGTGGTTTTCAATTGCTTCTCTGCTTGA

Protein sequence

MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGADNVVFNCFSA*

Homology

[Close]

BLAST of CSPI05G05640 vs. ExPASy TrEMBL
Match: A0A0A0KKA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.4e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60
          MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA
Sbjct: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60

Query: 61 DNVVFNCFSA 71
          DNVVFNCFSA
Sbjct: 61 DNVVFNCFSA 70

[Close]

BLAST of CSPI05G05640 vs. ExPASy TrEMBL
Match: A0A1R3IAB5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13647 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 9.2e-04
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 1  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATG- 60
          MDVFIP++YVIRRRIEKK AA A + T    P   +    +K+   P+    FRF +T  
Sbjct: 1  MDVFIPEEYVIRRRIEKK-AAAAIINTGKRLPEAGKKVEKEKKTVLPSP---FRFDSTNE 60

Query: 61 --------ADNVVFNCFSA 71
                  A+NVVF+CFSA
Sbjct: 61 FLVPAGGIAENVVFSCFSA 75

[Close]

BLAST of CSPI05G05640 vs. NCBI nr
Match: KAE8647863.1 (hypothetical protein Csa_000530 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 2.8e-31
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1   MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 60
           MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA
Sbjct: 71  MDVFIPDDYVIRRRIEKKLAAQAPVKTRHPHPADQRPRNSDKEKEAPAKTGLFRFTATGA 130

Query: 61  DNVVFNCFSA 71
           DNVVFNCFSA
Sbjct: 131 DNVVFNCFSA 140

The following BLAST results are available for this feature:

BLAST of CSPI05G05640 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI05G05640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKA7	1.4e-31	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G154820 PE=4 SV=1	[more]
A0A1R3IAB5	9.2e-04	45.57	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_13647 PE=4 ...	[more]

BLAST of CSPI05G05640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647863.1	2.8e-31	100.00	hypothetical protein Csa_000530 [Cucumis sativus]	[more]

BLAST of CSPI05G05640 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G05640.1	CSPI05G05640.1	mRNA