Cucsat.G12854.T6 (mRNA) Cucumber (B10) v3

Overview


Name	Cucsat.G12854.T6
Type	mRNA
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	pentatricopeptide repeat-containing protein At1g14470
Location	ctg1838: 5807084 .. 5808251 (-)
RNA-Seq Expression	Cucsat.G12854.T6
Synteny	Cucsat.G12854.T6

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTGGCCGGATCGCGGTGGAGTTTTGAGAGAGAGCAAAGCAACGGCGGAATGACGGTATTTCACTTCTTCAACTGTGCCATTCTCACTTTCGGTCCTCATGCTGTCTACTACTCCGCAACCCCCTTGTAAGGATCTCACTTTCTTCTTTTGATCTCTTCTTCCCAATACTGCCTTTTCTTGAAATTCTACTCTCTTTGCTTTCTTTGAATCCGAATTCGTCTGGAGCTCGTTTTAATATCGGACTGATTCTTTCTGTTGAAACCCCCTCTCTTTGCCTTTTTTCTTTTTTAAATGATTTCTTGATGTTTTGTTTGGGCTGTTCAATTTGCATCTGTATATCAGAGTTATCTTAGATAATCTGTTTAAAAACAAGTCTCAAATCTTGTAAACTACTGAAATGACTATCAAGATTTGATCCGGATGCCCCAATTCTGTTCTTTTGATGACATCAAATTGCAGTAATTAATTAGAGTAGTGGAAACGGGTTTCTATTGAAAGTGCAACGTTCTAATTTCTCCCATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTGGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATATGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTAGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTTG

Coding sequence (CDS)

ATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTGGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATATGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTAGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTT

Protein sequence

MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF

Homology

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-45
Identity = 94/213 (44.13%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 4   LVALASKISNIRQLRQFHGHL-VHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPS 63
           L A+AS+     QL Q H  L V NSL   +YW S ++  CTRL A   Y   IF S   
Sbjct: 9   LAAIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTF 68

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVL 123
           P+  V + M KY+S+M   N V+ L++      + P  F +  +IK AG+ G +F A V 
Sbjct: 69  PNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQALVE 128

Query: 124 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 183
           KLG   D ++RN I+DMY K+  V+ AR +F+Q+++R  +DWN MISG WK GN+ EA  
Sbjct: 129 KLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACK 188

Query: 184 LFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
           LF+MMP  ++++WT M+TG+AK+ DLE+AR+YF
Sbjct: 189 LFDMMPENDVVSWTVMITGFAKVKDLENARKYF 221

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-22
Identity = 56/218 (25.69%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPS 63
           L++      N+ Q++Q HGH++   L    Y ++ L+   T+L      Y   +      
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KSGNMF 123
            +  +++ +++ Y+  G  ++ ++++ C     + P  F +  L+K  G       G  F
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 124 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 183
           HA   +L      ++ N ++DMY K   +D AR +F++M ER +  W  +I+   + GN 
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231

Query: 184 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             A  LF  +P ++++ WT+MVTG+A+    + A  YF
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.8e-22
Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTS 60
           ++  ++L +   N+R L Q HG  +   + + +Y+   L+++C   +     Y   +   
Sbjct: 5   IHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC 64

Query: 61  SPSPDASVYSCMLKYYSRMG-AHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KS 120
            P PDA +++ +++ YS     HN V    +      + P  F + ++IK        ++
Sbjct: 65  FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124

Query: 121 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 180
           G   H   LK G     F+   ++ MY   G V+ AR +F++M +  L  WN++I+ C++
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

Query: 181 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             +   A  +F+ M  RN  +W  M+ GY K G+LESA+R F
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIF 226

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-21
Identity = 57/219 (26.03%), Postives = 112/219 (51.14%), Query Frame = 0


Query: 5   VALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAH---PAYVDSIFTSSP 64
           ++L      ++ LR  H  ++   LH+ NY +S L+  C  L  H     Y  S+F +  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQ 96

Query: 65  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKS-----GNM 124
            P+  +++ M + ++        + L+ C  SL L P  + + +++K   KS     G  
Sbjct: 97  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 156

Query: 125 FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 184
            H +VLKLG   D ++  +++ MY +NG+++ A  +F++   R +  + ++I G    G 
Sbjct: 157 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 216

Query: 185 ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
              A  LF+ +P +++++W +M++GYA+ G+ + A   F
Sbjct: 217 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELF 254

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-20
Identity = 60/209 (28.71%), Postives = 107/209 (51.20%), Query Frame = 0


Query: 13  NIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSPDASVYSCM 72
           NIR L+Q H  +V N L S+   V  L+ + +  +     Y   +F   P PD S+ + +
Sbjct: 24  NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83

Query: 73  LKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGH 132
           L+  ++     + VSL+       + P  + + +++K   K     +G  FH  V++ G 
Sbjct: 84  LRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF 143

Query: 133 IDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNM 192
           + + +++NA++  +A  G + +A  LF+  A+     W+SM SG  K G   EA+ LF+ 
Sbjct: 144 VLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203

Query: 193 MPARNIITWTSMVTGYAKMGDLESARRYF 216
           MP ++ + W  M+TG  K  +++SAR  F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELF 232

[Close]

BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: KAE8651312.1 (hypothetical protein Csa_002264 [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 4.64e-150
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_004147828.2 (pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 2.94e-148
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 9   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 68

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 69  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 128

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 129 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 188

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 189 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 223

[Close]

BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_008454670.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo])

HSP 1 Score: 413 bits (1062), Expect = 1.12e-137
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: KAA0057172.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 413 bits (1062), Expect = 1.28e-135
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. NCBI nr
Match: XP_038898615.1 (pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida])

HSP 1 Score: 390 bits (1002), Expect = 1.13e-128
Identity = 190/215 (88.37%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M EL A+ASKISNIRQLRQ HGHLV NSLHSHNYWVSLLLINCTRLHAHPAYV SIFTSS
Sbjct: 1   MSELGAIASKISNIRQLRQLHGHLVLNSLHSHNYWVSLLLINCTRLHAHPAYVASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSP+ SVYSCMLKYYSRMGAHN+VVSLF+C  SL+LRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPNGSVYSCMLKYYSRMGAHNEVVSLFRCMQSLDLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGH+DD FIRNAILDMYAK GQVDLAR LF QMAERTLADWNSMISGCWKSGNET+A
Sbjct: 121 VLKLGHVDDQFIRNAILDMYAKYGQVDLARKLFAQMAERTLADWNSMISGCWKSGNETDA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFN MP RNIITWT+MVTGYAKMGDLE+ARRYF
Sbjct: 181 VMLFNEMPDRNIITWTAMVTGYAKMGDLETARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A1S3BZ59 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN=LOC103495023 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 5.41e-138
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A5D3DV14 (Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00350 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 6.19e-136
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1BVU9 (pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 3.57e-122
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1BWI0 (pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 8.09e-116
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL
Match: A0A6J1FMC6 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3662 GN=LOC111446708 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 3.20e-115
Identity = 173/215 (80.47%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MY+LVA+A+KISNI QLRQ H HLV NSL S NYWVSLLL  CTRLHAHP+Y  SIFTSS
Sbjct: 1   MYDLVAIATKISNISQLRQLHAHLVLNSLQSQNYWVSLLLTICTRLHAHPSYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           P P+ASVYSCMLKYYSRMGAH++VVSLF+C   L+LRP P VYIYLIKLAGKSGN+FHA 
Sbjct: 61  PYPNASVYSCMLKYYSRMGAHDEVVSLFRCMQCLDLRPHPSVYIYLIKLAGKSGNLFHAS 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNA+LDMYAK GQVDLAR LFEQM  RTLADWNSMISGCW SGNE +A
Sbjct: 121 VLKLGHIDDHFIRNAVLDMYAKYGQVDLARKLFEQMPNRTLADWNSMISGCWNSGNEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMP RN I+WT+MVTGYAK  DLESARRYF
Sbjct: 181 VMLFNMMPDRNTISWTAMVTGYAKRRDLESARRYF 215

The following BLAST results are available for this feature:

BLAST of Cucsat.G12854.T6 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9R6	2.2e-45	44.13	Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX...	[more]
Q9FFG8	4.4e-22	25.69	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX...	[more]
Q9CA54	9.8e-22	27.03	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	2.8e-21	26.03	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LXF2	2.4e-20	28.71	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cucsat.G12854.T6 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651312.1	4.64e-150	99.53	hypothetical protein Csa_002264 [Cucumis sativus]	[more]
XP_004147828.2	2.94e-148	99.53	pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus]	[more]
XP_008454670.1	1.12e-137	93.02	PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo]	[more]
KAA0057172.1	1.28e-135	93.02	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155...	[more]
XP_038898615.1	1.13e-128	88.37	pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida]	[more]

BLAST of Cucsat.G12854.T6 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZ59	5.41e-138	93.02	pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3DV14	6.19e-136	93.02	Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BVU9	3.57e-122	80.93	pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordi...	[more]
A0A6J1BWI0	8.09e-116	80.93	pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordi...	[more]
A0A6J1FMC6	3.20e-115	80.47	pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 8..123 e-value: 1.7E-6 score: 29.5 coord: 124..215 e-value: 1.7E-21 score: 78.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 193..215 e-value: 1.9E-4 score: 21.5 coord: 134..159 e-value: 1.6E-4 score: 21.7 coord: 164..192 e-value: 4.9E-6 score: 26.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 193..215 e-value: 7.8E-4 score: 17.5 coord: 164..192 e-value: 4.9E-4 score: 18.1 coord: 134..158 e-value: 1.3E-4 score: 19.9
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 129..163 score: 9.437737
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 191..215 score: 9.20755
None	No IPR available	PANTHER	PTHR47924:SF29	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 112..215 coord: 15..187
None	No IPR available	PANTHER	PTHR47924	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 112..215 coord: 15..187

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsat.G12854	Cucsat.G12854	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12854.T6.E1	Cucsat.G12854.T6.E1	exon
Cucsat.G12854.T6.E2	Cucsat.G12854.T6.E2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12854.T6.C1	Cucsat.G12854.T6.C1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsat.G12854.T6	Cucsat.G12854.T6-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding