Cucsat.G12854 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12854
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	pentatricopeptide repeat-containing protein At1g14470
Location	ctg1838: 5807084 .. 5808251 (-)
RNA-Seq Expression	Cucsat.G12854
Synteny	Cucsat.G12854

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGATGAGCGAATATCAAAAGGGGAGGGCTTGGCCGGATCGCGGTGGAGTTTTGAGAGAGAGCAAAGCAACGGCGGAATGACGGTATTTCACTTCTTCAACTGTGCCATTCTCACTTTCGGTCCTCATGCTGTCTACTACTCCGCAACCCCCTTGTAAGGATCTCACTTTCTTCTTTTGATCTCTTCTTCCCAATACTGCCTTTTCTTGAAATTCTACTCTCTTTGCTTTCTTTGAATCCGAATTCGTCTGGAGCTCGTTTTAATATCGGACTGATTCTTTCTGTTGAAACCCCCTCTCTTTGCCTTTTTTCTTTTTTAAATGATTTCTTGATGTTTTGTTTGGGCTGTTCAATTTGCATCTGTATATCAGAGTTATCTTAGATAATCTGTTTAAAAACAAGTCTCAAATCTTGTAAACTACTGAAATGACTATCAAGATTTGATCCGGATGCCCCAATTCTGTTCTTTTGATGACATCAAATTGCAGTAATTAATTAGAGTAGTGGAAACGGGTTTCTATTGAAAGTGCAACGTTCTAATTTCTCCCATGTACGAATTGGTCGCCTTAGCTTCCAAAATAAGCAATATACGTCAGTTAAGACAATTCCACGGGCATCTTGTTCACAATTCCCTCCATTCTCATAACTACTGGGTTTCTCTGCTCCTCATTAACTGTACCCGTCTTCACGCTCATCCTGCCTATGTGGATTCTATTTTTACCTCCTCGCCGTCCCCCGATGCTTCTGTTTACAGTTGTATGCTCAAATATTACTCCCGCATGGGTGCGCACAATCAAGTGGTTTCCCTCTTCAAATGTACGCATTCTCTAAATCTCAGGCCTCAGCCCTTTGTTTACATTTACTTGATCAAGTTAGCTGGTAAGTCTGGCAATATGTTCCATGCTTATGTCCTGAAGTTGGGCCATATTGACGACCACTTCATCCGTAATGCTATCTTGGATATGTATGCTAAAAATGGCCAAGTAGATCTTGCCAGGAATCTGTTTGAGCAAATGGCTGAAAGAACTTTAGCGGACTGGAATTCAATGATTTCTGGCTGTTGGAAATCAGGAAATGAAACTGAAGCGGTTGTGCTGTTTAATATGATGCCTGCTAGGAATATTATTACATGGACCTCCATGGTTACTGGGTATGCCAAGATGGGGGACTTGGAGAGTGCTAGAAGGTATTTTGATGAGATGCCAGAGAGAAGTGTAGTCTCATGGAATGCAATGCAATCAGCTTATGCTCAAAAGGAATGTCCAAAAGAGGCTTTGAATTTGTTCCATCAAATGCTGGAAGAAGGGATCACTCCTGATGATACAACATGGGTTGTTACAATTTCATCATGCTCTTCCATCGGTGATCCTACCCTTGCTGATTCAATTCTAAGAATGATCGACCAAAAGCATATCGTTTTGAATAGTTTTGTCAAGACAGCTTTACTTGACATGCATGCAAAATTTGGTAACCTTGAGATTGCTAGAAATATCTTTGACGAATTGGGAAGTCAGAGGAATGCTGTTACTTGGAATATCATGATCTCAGCTTATACGAGGGTGGGAAAACTGTCATTAGCTCGAGAGTTGTTTGATAATATGCCAAAAAGAGATGTTGTTTCATGGAATTCGATGATAGCTGGCTATGCACAAAATGGAGAGTCAGCCATGTCAATTGAGCTCTTTAAAGAAATGATTTCTTGTATGGATATACAGCCAGATGAGGTTACCATAGCTAGTGTTTTGTCTGCTTGTGGTCATATTGGAGCTCTAAAGTTGAGTTACTGGGTTCTAGATATTGTTCGAGAGAAAAACATTAAGTTGGGGATCTCAGGATTCAACTCTTTGATATTTATGTACTCTAAGTGTGGAAGTGTGGCAGATGCCCATAGGATATTCCAAACTATGGGGACAAGAGATGTTGTTTCTTTCAATACACTGATTTCAGGATTTGCAGCCAATGGCCATGGGAAGGAAGCGATCAAGTTAGTATTAACAATGGAGGAAGAAGGAATTGAACCAGACCATGTCACATATATTGGTGTTTTGACTGCATGTAGCCATGCAGGGCTGCTGAATGAAGGTAAAAACGTCTTTAAGTCAATTCAAGCACCTACCGTGGACCATTATGCCTGTATGGTTGATTTATTAGGAAGAGCAGGTGAATTAGATGAAGCCAAAATGTTGATTCAATCTATGCCGATGAAACCCCATGCTGGTGTTTATGGCTCTTTGTTGAATGCCAGTCGAATTCATAAAAGAGTTGGGTTAGGAGAACTTGCTGCTAGCAAGCTCTTTGAACTTGAACCTCAAAACCTCGGAAATTATGTTCTACTTTCTAATATATATGCCTCATTCGGAAGATGGGAAGATGTTAAAAGGGTTAGAGAGATGATGAAGAAGGGAGGTTTGAAGAAATCAGTTGGGATGAGTTGGGTGGAATATAAGGGTCAAGTGCATAAGTTCACTGTGGGCGATAGATCACATGAACAATCAAAAGATATATATAAATTGTTGGCTGAACTTGAAAGGAAGATGAAAAGGGTTGGCTTTGTGGCTGATAAAAGTTGTGCACTTCGAGATGTTGAGGAGGAAGAGAAGGAAGAAATGCTGGGAACTCACAGTGAGAAGTTGGCCATTTGTTTTGCTCTCCTTATAAGTGAAGTGGGGACAACAATTAGAGTAGTAAAGAATTTGAGGATTTGTTTGGATTGCCATACTGCTATTAAGATGATCTCAAAGCTAGAGGGAAGAGAGATCGTGGTTCGTGATAATAATAGGTTCCATTGTTTTAGTGAAGGGATGTGTTCTTGTCATGATTACTGGTGAATCAGCAAAGAGCAACTTTATGTATAAAGTTTAATTTCATAAAGAGAAATTGTAAGCCAAACTGGCCTCCTATAGTAATGCATGAAGATTACTATACTTGTCCCCATCCTCAATTTTTAGCAGAAAAATACTTATTGATTAGGTGTGAAAAATACTTATTGATTAGGTGCGGGGATCAATATCAAAGAGCATTATCATCTCTGTGACCTACCTATTAGAGCCGTAGGAGTTTTGTATTTTCATTTCTTACTTCGGTGTTATTTTGTACTTTATCCATTCACAATTCAGTGGACCTGACCAGCTCTATCAGTCCATAATATTAATGATAATAATAATAAGAATAAGATATTGGTCTGAGGAATCTTTTAAAGACTTTATGGAGAAGTAAATCTATGATACAATTGTTCATGGAATTGTTAAAAGCTTATGCTAATATATGTGGCTCTGTCATAGTTTTGATTTATCTAAAATACAATTTCATTTTCACTAAGAACTCTAGCTATGCAGATCTGAGTATGATACACTAGGAACATCAGTCAAAGCTGCACTTGTTTATCTTGGAACTGCCTTAGTAAAGGTTAGTGATTTCTGAACACTCCCAAGTCCAAAGTGGATTTGTGACCTTGAATTTCTGTTCCAATTTTTTTGCTATGTTATTGTTATTACTAGAGATACTTCTTGATTCTAATTGGTTTCTTTCTCTGTATTCTCATCAGCTTGTATGCCTTGCAACTTTTCTTAACGTGTCAGAGAATGACTCCTTTGACCCATATCAGGTACCGACAATCTTTTTGTCTATACTTAGTGAAATATCATCTGTGAAATATTGTGGTTCCATCAAATGTATTGACTGTTCCTGAAAAAGAAAAAAAAAAGTTAGAATTCCTGTTATCTTATAGTTACAATTATGTTCTTAATCTATGTATAATCATTCCTGTATGAACATATGTATATATGTATGTATATATAGATAGACACACATGCATATTATTCACACACACACGCATCTCCAAGGTATGTATTATTTTGGAACCTTTCGCTTGTCTAAATTCTACAAGTAGAAGGGTTGAGTTAGTCTATCGTTAGAAATTCTTATATATGGAATTTCTGTTTAAATAGAACATGAGTTAATAATTATGCTATGCCATTGGAATGAAAAAGCACCACCTTCCTAAGATTCAAAATTTGACTACTCGAATCAAAGTAGTATTACAGAACTGTTCTTAGTATCAAATTGAAAAGGGATCATTTGGAAAGTAGTTGCAAGGCTCTGTTTATAGAACTAGCCTTGTTTTCCTCCGCATTTCGCGTCTTACATCAAATGGCCATATATCTGAACTAAATGGTATGGTTCTTTTATTAGATTCTCATATCAAATGTACTGATACTTCCAAGTTTCAACTGAATTCGCCCTAGTTTTAGGAAATTTCATTAGAAACAGGAGCTTATAACTTTTGCGATTGCCGATGTTTAACAAGGTATAATTCTTGTACCTCAGGAACTGTTGAAAGCGCTCATCGGTTTTATTGATGTCGCTGGAATTTACTTTGCTTTGACCCAGTTGACTTACCGAAATATATCCCAGAACCATAAGTTTCAGGCAGTTGGACTGGGTGAGTTCATAGTCAATTATTGTAATTATTTTCTTGATTCGAAGGATTTATACAGTTATGACCTCTTGATGCTTATTTATTTCCAGCTTTCAATATTTTTTCAATCTTTAAACAGTGCATGGCCTTGTTACTCTATCTGCAGGTTGGGCGTTCGCCGATTCTGTCTTGCATAGATTGGCACCACTTTGGGTAGGGGCCAGAGGACTGGAGTTTACTTGGGATTACATTTTGCAGGGCCTTGAAGCTAATGCAAATCTGGTTTTCATCTTTCTTCTTCATTACTTCTAAATATTCTTAATTTGGTTATTTTACCGTTGATATGATCCTATTTTATTTCCAATAAATTCTTGGGATCCTTATTTTGGATTCTGATTGAGATATCCCTAAACTTGACTGTTTCTTTCTCTAATTTATTCTCCCCAATTCAATTCAGGTGTTGAGCATATCTCTTGCTGCATTGGGATCTTTGATGTGGCTGAGGAAGAACAAGCCCAAAACTCTAATTCCCATAATATATGTCTGTGCACTGATCGTAGCTACCATGCCATCCATCACAAGGTATTCCATCCATCCATCCACAACTTATTTACCTGCTTTTGATTATATAAGCATCAGTAGGCAAGTAAAATAATAAGGTTGTAGATTCAAAACTTACAATAAGCTTAAACTATACGTGGAGATAGTAAAATAATAAAATAATTGTGTTTTGCAGCTACTTAAGGCGAGGAATGGGTTGGCATTTTCCAAAGGTGGTGGGATTTGAGCTCTTCACCTCTCTGGTGATGGCTTTTATTAGTTGGCAGCTTTTCTCTGCTTGCCAGAGGCCCTCTGTCTAAGGGTCACCCTCTACTTCTGAGAGGATATATTGAGGCTGGACGTGATTGACTTTTGGATACGAACCAAACCTTCTTTTTTGAGCTATTTTCCGCCTTATTTTTTCCTTTTTTTATCATTTGCAATATCATAGTGTTGTTTAGTTTCAGATTTAGTTTTAGTTTTTTCCTTGTTTTCTTTTTGGACATTCTGAATGGGAAGTAAAAGCTTAGCTTGACAGAGACAATGTGATCTTTACTCTTTTTCTTCCCTAACCAAAGGAAAAAGGAATATTTGGTCTTTTTCAATTCTTCTACTTTGGAAAAAGGGATTTAAAGCAATCCCTAGTTTTAGTAAAAGCACTGCCTCCTATGTCTCCCGCGTCTCATGATTTAACCTTTTTTTTTTTTTTTTGAAATTTTACATAAATGTAC

Coding sequence (CDS)

GATGAGCGAATATCAAAAGGGGAGGGCTTGGCCGGATCGCGGTGGAGTTTTGAGAGAGAGCAAAGCAACGGCGGAATGACGGTATTTCACTTCTTCAACTGTGCCATTCTCACTTTCGGTCCTCATGCTGTCTACTACTCCGCAACCCCCTTATCTGAGTATGATACACTAGGAACATCAGTCAAAGCTGCACTTGTTTATCTTGGAACTGCCTTAGTAAAGCTTGTATGCCTTGCAACTTTTCTTAACGTGTCAGAGAATGACTCCTTTGACCCATATCAGGAACTGTTGAAAGCGCTCATCGGTTTTATTGATGTCGCTGGAATTTACTTTGCTTTGACCCAGTTGACTTACCGAAATATATCCCAGAACCATAAGTTTCAGGCAGTTGGACTGGGTTGGGCGTTCGCCGATTCTGTCTTGCATAGATTGGCACCACTTTGGGTAGGGGCCAGAGGACTGGAGTTTACTTGGGATTACATTTTGCAGGGCCTTGAAGCTAATGCAAATCTGGTTTTCATCTTTCTTCTTCATTACTTCTAA

Protein sequence

DERISKGEGLAGSRWSFEREQSNGGMTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSVKAALVYLGTALVKLVCLATFLNVSENDSFDPYQELLKALIGFIDVAGIYFALTQLTYRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQGLEANANLVFIFLLHYF

Homology

[Close]

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot
Match: Q9M9R6 (Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX=3702 GN=PCMP-A4 PE=2 SV=2)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-45
Identity = 94/213 (44.13%), Postives = 133/213 (62.44%), Query Frame = 0


Query: 4   LVALASKISNIRQLRQFHGHL-VHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPS 63
           L A+AS+     QL Q H  L V NSL   +YW S ++  CTRL A   Y   IF S   
Sbjct: 9   LAAIASQALTFPQLNQIHAQLIVFNSLPRQSYWASRIISCCTRLRAPSYYTRLIFDSVTF 68

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAYVL 123
           P+  V + M KY+S+M   N V+ L++      + P  F +  +IK AG+ G +F A V 
Sbjct: 69  PNVFVVNSMFKYFSKMDMANDVLRLYEQRSRCGIMPDAFSFPVVIKSAGRFGILFQALVE 128

Query: 124 KLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 183
           KLG   D ++RN I+DMY K+  V+ AR +F+Q+++R  +DWN MISG WK GN+ EA  
Sbjct: 129 KLGFFKDPYVRNVIMDMYVKHESVESARKVFDQISQRKGSDWNVMISGYWKWGNKEEACK 188

Query: 184 LFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
           LF+MMP  ++++WT M+TG+AK+ DLE+AR+YF
Sbjct: 189 LFDMMPENDVVSWTVMITGFAKVKDLENARKYF 221

[Close]

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot
Match: Q9FFG8 (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.4e-22
Identity = 56/218 (25.69%), Postives = 107/218 (49.08%), Query Frame = 0


Query: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHA-HPAYVDSIFTSSPS 63
           L++      N+ Q++Q HGH++   L    Y ++ L+   T+L      Y   +      
Sbjct: 52  LISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQF 111

Query: 64  PDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KSGNMF 123
            +  +++ +++ Y+  G  ++ ++++ C     + P  F +  L+K  G       G  F
Sbjct: 112 RNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQF 171

Query: 124 HAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNE 183
           HA   +L      ++ N ++DMY K   +D AR +F++M ER +  W  +I+   + GN 
Sbjct: 172 HAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNM 231

Query: 184 TEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             A  LF  +P ++++ WT+MVTG+A+    + A  YF
Sbjct: 232 ECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYF 269

[Close]

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot
Match: Q9CA54 (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.8e-22
Identity = 60/222 (27.03%), Postives = 109/222 (49.10%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTS 60
           ++  ++L +   N+R L Q HG  +   + + +Y+   L+++C   +     Y   +   
Sbjct: 5   IHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLC 64

Query: 61  SPSPDASVYSCMLKYYSRMG-AHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAG-----KS 120
            P PDA +++ +++ YS     HN V    +      + P  F + ++IK        ++
Sbjct: 65  FPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRT 124

Query: 121 GNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWK 180
           G   H   LK G     F+   ++ MY   G V+ AR +F++M +  L  WN++I+ C++
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184

Query: 181 SGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
             +   A  +F+ M  RN  +W  M+ GY K G+LESA+R F
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIF 226

[Close]

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-21
Identity = 57/219 (26.03%), Postives = 112/219 (51.14%), Query Frame = 0


Query: 5   VALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAH---PAYVDSIFTSSP 64
           ++L      ++ LR  H  ++   LH+ NY +S L+  C  L  H     Y  S+F +  
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQ 96

Query: 65  SPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKS-----GNM 124
            P+  +++ M + ++        + L+ C  SL L P  + + +++K   KS     G  
Sbjct: 97  EPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQ 156

Query: 125 FHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGN 184
            H +VLKLG   D ++  +++ MY +NG+++ A  +F++   R +  + ++I G    G 
Sbjct: 157 IHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGY 216

Query: 185 ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 216
              A  LF+ +P +++++W +M++GYA+ G+ + A   F
Sbjct: 217 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELF 254

[Close]

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot
Match: Q9LXF2 (Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 2.4e-20
Identity = 60/209 (28.71%), Postives = 107/209 (51.20%), Query Frame = 0


Query: 13  NIRQLRQFHGHLVHNSLHSHNYWVSLLLINCT-RLHAHPAYVDSIFTSSPSPDASVYSCM 72
           NIR L+Q H  +V N L S+   V  L+ + +  +     Y   +F   P PD S+ + +
Sbjct: 24  NIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHV 83

Query: 73  LKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGK-----SGNMFHAYVLKLGH 132
           L+  ++     + VSL+       + P  + + +++K   K     +G  FH  V++ G 
Sbjct: 84  LRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF 143

Query: 133 IDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNM 192
           + + +++NA++  +A  G + +A  LF+  A+     W+SM SG  K G   EA+ LF+ 
Sbjct: 144 VLNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDE 203

Query: 193 MPARNIITWTSMVTGYAKMGDLESARRYF 216
           MP ++ + W  M+TG  K  +++SAR  F
Sbjct: 204 MPYKDQVAWNVMITGCLKCKEMDSARELF 232

[Close]

BLAST of Cucsat.G12854 vs. NCBI nr
Match: KAE8651312.1 (hypothetical protein Csa_002264 [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 4.64e-150
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. NCBI nr
Match: XP_004147828.2 (pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus])

HSP 1 Score: 441 bits (1133), Expect = 2.94e-148
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS
Sbjct: 9   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 68

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 69  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAY 128

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA
Sbjct: 129 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 188

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF
Sbjct: 189 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 223

[Close]

BLAST of Cucsat.G12854 vs. NCBI nr
Match: XP_008454670.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo])

HSP 1 Score: 413 bits (1062), Expect = 1.12e-137
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. NCBI nr
Match: KAA0057172.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 413 bits (1062), Expect = 1.28e-135
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. NCBI nr
Match: XP_038898615.1 (pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida])

HSP 1 Score: 390 bits (1002), Expect = 1.13e-128
Identity = 190/215 (88.37%), Postives = 201/215 (93.49%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M EL A+ASKISNIRQLRQ HGHLV NSLHSHNYWVSLLLINCTRLHAHPAYV SIFTSS
Sbjct: 1   MSELGAIASKISNIRQLRQLHGHLVLNSLHSHNYWVSLLLINCTRLHAHPAYVASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSP+ SVYSCMLKYYSRMGAHN+VVSLF+C  SL+LRPQPFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  PSPNGSVYSCMLKYYSRMGAHNEVVSLFRCMQSLDLRPQPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGH+DD FIRNAILDMYAK GQVDLAR LF QMAERTLADWNSMISGCWKSGNET+A
Sbjct: 121 VLKLGHVDDQFIRNAILDMYAKYGQVDLARKLFAQMAERTLADWNSMISGCWKSGNETDA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFN MP RNIITWT+MVTGYAKMGDLE+ARRYF
Sbjct: 181 VMLFNEMPDRNIITWTAMVTGYAKMGDLETARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL
Match: A0A1S3BZ59 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN=LOC103495023 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 5.41e-138
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL
Match: A0A5D3DV14 (Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00350 PE=3 SV=1)

HSP 1 Score: 413 bits (1062), Expect = 6.19e-136
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MYELVALASKISNIRQLR FHGHLVHNSLHSHNYWVSLLL+ C RLHAHPAYVDSIFTSS
Sbjct: 1   MYELVALASKISNIRQLRLFHGHLVHNSLHSHNYWVSLLLVICNRLHAHPAYVDSIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           PSPDASVYSCMLKYYSRMGAHNQVVSLFKC HSL+LRPQPFVYIYLIK AGKSGN+FHAY
Sbjct: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCMHSLDLRPQPFVYIYLIKSAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDD FIRNAILDMY KNGQVDLAR LFEQMAE+TL DWNSMISGCWKSGNETEA
Sbjct: 121 VLKLGHIDDRFIRNAILDMYVKNGQVDLARKLFEQMAEKTLVDWNSMISGCWKSGNETEA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWTSMVTGYAK+GDLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTSMVTGYAKVGDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL
Match: A0A6J1BVU9 (pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 3.57e-122
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL
Match: A0A6J1BWI0 (pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005962 PE=3 SV=1)

HSP 1 Score: 356 bits (914), Expect = 8.09e-116
Identity = 174/215 (80.93%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           M +L A+ +KIS I QLRQ H HLV NSLHSHNYWVSLL+  CT L AHPAY  SIFTSS
Sbjct: 1   MSKLGAIVTKISYISQLRQLHAHLVLNSLHSHNYWVSLLITLCTHLQAHPAYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
            SP  SVYSCMLKYYSRMGAHN+VVS+F+C   L+LRP PFVYIYLIKLAGKSGN+FHAY
Sbjct: 61  TSPSVSVYSCMLKYYSRMGAHNEVVSIFRCMQCLDLRPHPFVYIYLIKLAGKSGNLFHAY 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHF+RNAILDMYAK GQVDLAR LFEQMA+RTLADWNSMISG WKSG E +A
Sbjct: 121 VLKLGHIDDHFVRNAILDMYAKYGQVDLARKLFEQMADRTLADWNSMISGYWKSGKEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMPARNIITWT+MVTGYAKM DLESARRYF
Sbjct: 181 VMLFNMMPARNIITWTAMVTGYAKMKDLESARRYF 215

[Close]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL
Match: A0A6J1FMC6 (pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3662 GN=LOC111446708 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 3.20e-115
Identity = 173/215 (80.47%), Postives = 188/215 (87.44%), Query Frame = 0


Query: 1   MYELVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSS 60
           MY+LVA+A+KISNI QLRQ H HLV NSL S NYWVSLLL  CTRLHAHP+Y  SIFTSS
Sbjct: 1   MYDLVAIATKISNISQLRQLHAHLVLNSLQSQNYWVSLLLTICTRLHAHPSYAASIFTSS 60

Query: 61  PSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNMFHAY 120
           P P+ASVYSCMLKYYSRMGAH++VVSLF+C   L+LRP P VYIYLIKLAGKSGN+FHA 
Sbjct: 61  PYPNASVYSCMLKYYSRMGAHDEVVSLFRCMQCLDLRPHPSVYIYLIKLAGKSGNLFHAS 120

Query: 121 VLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEA 180
           VLKLGHIDDHFIRNA+LDMYAK GQVDLAR LFEQM  RTLADWNSMISGCW SGNE +A
Sbjct: 121 VLKLGHIDDHFIRNAVLDMYAKYGQVDLARKLFEQMPNRTLADWNSMISGCWNSGNEADA 180

Query: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYF 215
           V+LFNMMP RN I+WT+MVTGYAK  DLESARRYF
Sbjct: 181 VMLFNMMPDRNTISWTAMVTGYAKRRDLESARRYF 215

The following BLAST results are available for this feature:

BLAST of Cucsat.G12854 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9R6	2.2e-45	44.13	Pentatricopeptide repeat-containing protein At1g14470 OS=Arabidopsis thaliana OX...	[more]
Q9FFG8	4.4e-22	25.69	Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana OX...	[more]
Q9CA54	9.8e-22	27.03	Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX...	[more]
Q9LN01	2.8e-21	26.03	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
Q9LXF2	2.4e-20	28.71	Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cucsat.G12854 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651312.1	4.64e-150	99.53	hypothetical protein Csa_002264 [Cucumis sativus]	[more]
XP_004147828.2	2.94e-148	99.53	pentatricopeptide repeat-containing protein At1g14470, partial [Cucumis sativus]	[more]
XP_008454670.1	1.12e-137	93.02	PREDICTED: pentatricopeptide repeat-containing protein At1g14470 [Cucumis melo]	[more]
KAA0057172.1	1.28e-135	93.02	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK27155...	[more]
XP_038898615.1	1.13e-128	88.37	pentatricopeptide repeat-containing protein At1g14470 [Benincasa hispida]	[more]

BLAST of Cucsat.G12854 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BZ59	5.41e-138	93.02	pentatricopeptide repeat-containing protein At1g14470 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3DV14	6.19e-136	93.02	Transmembrane protein 147 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BVU9	3.57e-122	80.93	pentatricopeptide repeat-containing protein At1g14470-like isoform X2 OS=Momordi...	[more]
A0A6J1BWI0	8.09e-116	80.93	pentatricopeptide repeat-containing protein At1g14470-like isoform X1 OS=Momordi...	[more]
A0A6J1FMC6	3.20e-115	80.47	pentatricopeptide repeat-containing protein At1g14470 OS=Cucurbita moschata OX=3...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019164	Transmembrane protein 147	PFAM	PF09767	DUF2053	coord: 33..192 e-value: 1.0E-56 score: 191.5
IPR019164	Transmembrane protein 147	PANTHER	PTHR12869	SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN	coord: 32..258
None	No IPR available	PANTHER	PTHR12869:SF1	BNAA08G03740D PROTEIN	coord: 32..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12854.T5	Cucsat.G12854.T5	mRNA
Cucsat.G12854.T1	Cucsat.G12854.T1	mRNA
Cucsat.G12854.T4	Cucsat.G12854.T4	mRNA
Cucsat.G12854.T2	Cucsat.G12854.T2	mRNA
Cucsat.G12854.T6	Cucsat.G12854.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding