CsaV3_3G022630 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_3G022630
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr3: 20077257 .. 20077721 (+)
RNA-Seq Expression	CsaV3_3G022630
Synteny	CsaV3_3G022630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGAGCTGAGGTAGACAATATGGGAATAAAAGATTATGTAAAGGAAGAGGCAAAAGAAAGTGAAAAGATATACATGAGTGAAAGATTATGTAACAAGAAGAAGAAAAGAAGACTATGGAAGAAGCAAAACATCCAGGTGAGGAAGGAGGATCTTGAGGTTCCAACAAAAAGCACCTCATCACCTGGTGTTGATTTTACATGGTTAGCAACAAGGACCCCCACAAGATTCACAAAAGGAATTCATGTCCTTAGAAGAAGAAGCAAAGGAAGAGAGTGGGAGCCAAAGGTGGGGGAGGACGTGGCCGAGGAGTTCGAGAATAAAGAGAATAGAAACACTCTGTCGGAGGAGTTCAAGAAAGAAGAGATCCTAGAGCATTCAATGATGCTCTTGTGGGCACAAGTAGAGGATGAGCAAAATGGAAAGTTGGGACCTCAACACCATCCATATGGCAATAAATAA

mRNA sequence

ATGGAGGGAGCTGAGGTAGACAATATGGGAATAAAAGATTATGTAAAGGAAGAGGCAAAAGAAAGTGAAAAGATATACATGAGTGAAAGATTATGTAACAAGAAGAAGAAAAGAAGACTATGGAAGAAGCAAAACATCCAGGTGAGGAAGGAGGATCTTGAGGTTCCAACAAAAAGCACCTCATCACCTGGTGTTGATTTTACATGGTTAGCAACAAGGACCCCCACAAGATTCACAAAAGGAATTCATGTCCTTAGAAGAAGAAGCAAAGGAAGAGAGTGGGAGCCAAAGGTGGGGGAGGACGTGGCCGAGGAGTTCGAGAATAAAGAGAATAGAAACACTCTGTCGGAGGAGTTCAAGAAAGAAGAGATCCTAGAGCATTCAATGATGCTCTTGTGGGCACAAGTAGAGGATGAGCAAAATGGAAAGTTGGGACCTCAACACCATCCATATGGCAATAAATAA

Coding sequence (CDS)

ATGGAGGGAGCTGAGGTAGACAATATGGGAATAAAAGATTATGTAAAGGAAGAGGCAAAAGAAAGTGAAAAGATATACATGAGTGAAAGATTATGTAACAAGAAGAAGAAAAGAAGACTATGGAAGAAGCAAAACATCCAGGTGAGGAAGGAGGATCTTGAGGTTCCAACAAAAAGCACCTCATCACCTGGTGTTGATTTTACATGGTTAGCAACAAGGACCCCCACAAGATTCACAAAAGGAATTCATGTCCTTAGAAGAAGAAGCAAAGGAAGAGAGTGGGAGCCAAAGGTGGGGGAGGACGTGGCCGAGGAGTTCGAGAATAAAGAGAATAGAAACACTCTGTCGGAGGAGTTCAAGAAAGAAGAGATCCTAGAGCATTCAATGATGCTCTTGTGGGCACAAGTAGAGGATGAGCAAAATGGAAAGTTGGGACCTCAACACCATCCATATGGCAATAAATAA

Protein sequence

MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFKKEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK*

Homology

[Close]

BLAST of CsaV3_3G022630 vs. NCBI nr
Match: KGN57939.1 (hypothetical protein Csa_011472 [Cucumis sativus])

HSP 1 Score: 307.4 bits (786), Expect = 7.1e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60
           MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST
Sbjct: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60

Query: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK 120
           SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK
Sbjct: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK 120

Query: 121 KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK 155
           KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK
Sbjct: 121 KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK 154

[Close]

BLAST of CsaV3_3G022630 vs. NCBI nr
Match: KGN57975.1 (hypothetical protein Csa_011070 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74

Query: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134

Query: 150 PQHHPYGNK 155
           P HHP+G+K
Sbjct: 135 PHHHPFGDK 138

[Close]

BLAST of CsaV3_3G022630 vs. NCBI nr
Match: KGN46686.1 (hypothetical protein Csa_020981 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-18
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60
           ME AEV+NMG K   +E+A+ESEKIY ++RLCNKK+KRR   ++N Q RK+D+E+  +ST
Sbjct: 38  MEKAEVENMGKKIICREKAEESEKIYRNKRLCNKKRKRRRKNRRNSQARKKDIELSMEST 97

Query: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGRE 94
           SSP VDFT LATRTP R  K I  LRRRS+ RE
Sbjct: 98  SSPNVDFTKLATRTPARSAKEIWALRRRSEERE 130

[Close]

BLAST of CsaV3_3G022630 vs. NCBI nr
Match: KGN65003.1 (hypothetical protein Csa_022689 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.5e-13
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 151
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_3G022630 vs. NCBI nr
Match: KGN57730.1 (hypothetical protein Csa_010598 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 5.6e-08
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61

Query: 118 E----FKKEEILEHSMMLLWAQVED 139
           E     KKEEIL HS MLL AQ E+
Sbjct: 62  EKVSTHKKEEILAHSRMLLQAQAEE 72

[Close]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL
Match: A0A0A0LAF6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1)

HSP 1 Score: 307.4 bits (786), Expect = 3.5e-80
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60
           MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST
Sbjct: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60

Query: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK 120
           SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK
Sbjct: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEEFK 120

Query: 121 KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK 155
           KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK
Sbjct: 121 KEEILEHSMMLLWAQVEDEQNGKLGPQHHPYGNK 154

[Close]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL
Match: A0A0A0L7Q4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.4e-25
Identity = 74/129 (57.36%), Postives = 86/129 (66.67%), Query Frame = 0


Query: 30  RLCNKKKKRRLWKKQNIQVRKEDLEVPTKSTSSPGVDFTWLATRTPTRFTKGIHVLRRRS 89
           R    KK  R+ K      RKEDLE+P KSTSSP  DFT LATRTP R  KGI VL +RS
Sbjct: 15  RFQKHKKGERMEK-----ARKEDLELPIKSTSSPDADFTRLATRTPVRSAKGIQVLGKRS 74

Query: 90  KGREWEPKVGEDVAEEFENKENRNTLSEE----FKKEEILEHSMMLLWAQVEDEQNGKLG 149
           KG+EW  KV E VAEE E +E   T+SEE     KKEEIL  + MLLW Q++  +NGKLG
Sbjct: 75  KGKEWGTKVVEGVAEESEKEEKEITMSEEKLSIHKKEEILACARMLLWTQLDKGRNGKLG 134

Query: 150 PQHHPYGNK 155
           P HHP+G+K
Sbjct: 135 PHHHPFGDK 138

[Close]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL
Match: A0A0A0KG13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.7e-18
Identity = 57/93 (61.29%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1   MEGAEVDNMGIKDYVKEEAKESEKIYMSERLCNKKKKRRLWKKQNIQVRKEDLEVPTKST 60
           ME AEV+NMG K   +E+A+ESEKIY ++RLCNKK+KRR   ++N Q RK+D+E+  +ST
Sbjct: 38  MEKAEVENMGKKIICREKAEESEKIYRNKRLCNKKRKRRRKNRRNSQARKKDIELSMEST 97

Query: 61  SSPGVDFTWLATRTPTRFTKGIHVLRRRSKGRE 94
           SSP VDFT LATRTP R  K I  LRRRS+ RE
Sbjct: 98  SSPNVDFTKLATRTPARSAKEIWALRRRSEERE 130

[Close]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL
Match: A0A0A0LTC4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 7.3e-14
Identity = 54/95 (56.84%), Postives = 63/95 (66.32%), Query Frame = 0


Query: 60  TSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSEE- 119
           TSSP  DF+ LATRT  R TK I V  RR K  + E KVG+DVAEEFE ++ RNTLSEE 
Sbjct: 4   TSSPDADFSGLATRTLIRSTKEILVFERRRKEPKSETKVGKDVAEEFEKEKTRNTLSEEK 63

Query: 120 ---FKKEEILEHSMMLLWAQVEDEQNGKLGPQHHP 151
               KKEE   +S  LL AQVE+ Q  ++GP HHP
Sbjct: 64  VPNCKKEEGQVYSRTLLQAQVEEGQKEQVGPHHHP 98

[Close]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL
Match: A0A0A0L6W8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.7e-08
Identity = 47/85 (55.29%), Postives = 51/85 (60.00%), Query Frame = 0


Query: 58  KSTSSPGVDFTWLATRTPTRFTKGIHVLRRRSKGREWEPKVGEDVAEEFENKENRNTLSE 117
           +STSSP  DF  LATRTPTR T GI              + GEDVAEEFE +E  NTL E
Sbjct: 2   ESTSSPDADFIGLATRTPTRSTLGI--------------QAGEDVAEEFEKQEIINTLLE 61

Query: 118 E----FKKEEILEHSMMLLWAQVED 139
           E     KKEEIL HS MLL AQ E+
Sbjct: 62  EKVSTHKKEEILAHSRMLLQAQAEE 72

The following BLAST results are available for this feature:

BLAST of CsaV3_3G022630 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57939.1	7.1e-80	100.00	hypothetical protein Csa_011472 [Cucumis sativus]	[more]
KGN57975.1	5.0e-25	57.36	hypothetical protein Csa_011070 [Cucumis sativus]	[more]
KGN46686.1	3.5e-18	61.29	hypothetical protein Csa_020981 [Cucumis sativus]	[more]
KGN65003.1	1.5e-13	56.84	hypothetical protein Csa_022689 [Cucumis sativus]	[more]
KGN57730.1	5.6e-08	55.29	hypothetical protein Csa_010598 [Cucumis sativus]	[more]

BLAST of CsaV3_3G022630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAF6	3.5e-80	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G399460 PE=4 SV=1	[more]
A0A0A0L7Q4	2.4e-25	57.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417670 PE=4 SV=1	[more]
A0A0A0KG13	1.7e-18	61.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124010 PE=4 SV=1	[more]
A0A0A0LTC4	7.3e-14	56.84	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G173720 PE=4 SV=1	[more]
A0A0A0L6W8	2.7e-08	55.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G265260 PE=4 SV=1	[more]

BLAST of CsaV3_3G022630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_3G022630.1	CsaV3_3G022630.1	mRNA