Tan0015330.1 (mRNA) Snake gourd v1

Overview


Name	Tan0015330.1
Type	mRNA
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG06: 17230902 .. 17231249 (-)
Sequence length	348
RNA-Seq Expression	Tan0015330.1
Synteny	Tan0015330.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA

mRNA sequence

ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA

Coding sequence (CDS)

ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA

Protein sequence

MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGRDGKKDQSPNEGGRRERS

Homology

[Close]

BLAST of Tan0015330.1 vs. NCBI nr
Match: KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 5.6e-13
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAASN++ ASN YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPD 94
          NPL+D S  + ++ ++ ++PDVMSVMMADI P+
Sbjct: 61 NPLYDNSDSSSSKSKKETHPDVMSVMMADITPE 92

[Close]

BLAST of Tan0015330.1 vs. NCBI nr
Match: KAA0032586.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKK ASN++ AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          NPL+D S  A ++ ++ ++PDVMSVMMADI
Sbjct: 61 NPLYDNSNSASSKSKKEAHPDVMSVMMADI 89

[Close]

BLAST of Tan0015330.1 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          NPL++    A ++  + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89

[Close]

BLAST of Tan0015330.1 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          NPL++    A ++  + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89

[Close]

BLAST of Tan0015330.1 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAAS ++AAS+TYT P TRSRSKG+    D+   A+  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          NPL++    A ++  + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89

[Close]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAASN++ ASN YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPD 94
          NPL+D S  + ++ ++ ++PDVMSVMMADI P+
Sbjct: 61 NPLYDNSDSSSSKSKKETHPDVMSVMMADITPE 92

[Close]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match: A0A5D3DC86 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00350 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.7e-12
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKK ASN++ AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K+
Sbjct: 1  MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          NPL+D S  A ++ ++ ++PDVMSVMMADI
Sbjct: 61 NPLYDNSNSASSKSKKEAHPDVMSVMMADI 89

[Close]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match: A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKKAASN++ AS+ YT P TRSRSKG+    D+  + +   I+K+L E+ K  +++K+
Sbjct: 1  MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQGSN-VAQRILKQLIESPKAGIVIKE 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
          N L+D S  A N+ ++ ++PDV SVMMADI
Sbjct: 61 NSLYDNSDSASNKSKKEAHPDVKSVMMADI 89

[Close]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match: A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 0


Query: 1   MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
           MASKKAAS ++ AS+ YT P TR+RSKG+    D+  D +P +I+K+L E+ K  +++K+
Sbjct: 29  MASKKAASRSSVASDGYTGPITRNRSKGITQEQDQGSD-VPQSILKQLMESPKAVIVIKE 88

Query: 61  NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
           N L+D S  A ++ ++  +PDVMSVMM DI
Sbjct: 89  NSLYDNSDSASSKSKKKEHPDVMSVMMTDI 117

[Close]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match: A0A1S3C4J2 (uncharacterized protein LOC103496389 OS=Cucumis melo OX=3656 GN=LOC103496389 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 1  MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
          MASKK ASN+  AS+ YT P TRSRSKG+    D+  + +  +I+K+L E+ K  +++K 
Sbjct: 1  MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVV-QSILKQLMESPKAGIVIKK 60

Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGR 99
          NPL+D S  A +  ++ ++PDVMSVMMADI   E++ R
Sbjct: 61 NPLYDNSDLASSMSKKKAHPDVMSVMMADITDQEQHVR 97

The following BLAST results are available for this feature:

BLAST of Tan0015330.1 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0015330.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061113.1	5.6e-13	49.46	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp...	[more]
KAA0032586.1	1.8e-11	48.89	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gyp...	[more]
XP_031739134.1	5.2e-11	48.89	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	5.2e-11	48.89	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	5.2e-11	48.89	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BY54	2.7e-13	49.46	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DC86	8.7e-12	48.89	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFN2	2.5e-11	48.89	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VCU1	3.3e-11	47.78	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3C4J2	4.3e-11	46.94	uncharacterized protein LOC103496389 OS=Cucumis melo OX=3656 GN=LOC103496389 PE=...	[more]

BLAST of Tan0015330.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..115

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Tan0015330	Tan0015330	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0015330.1-cds	Tan0015330.1-cds-LG06:17230902..17231249	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Tan0015330.1-exon	Tan0015330.1-exon-LG06:17230902..17231249	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Tan0015330.1	Tan0015330.1-protein	polypeptide