Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA
mRNA sequence
ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA
Coding sequence (CDS)
ATGGCATCAAAGAAAGCTGCATCAAACACTGCTGCTGCAAGCAACACCTACACGAGTCCGACAACTCGCAGTCGTTCCAAAGGGGTTGAGACAAGTAATGATCGAACTCCTGATGCAATGCCAAACAACATCATCAAACGGCTAGATGAGGCTTCCAAAGGCAAGGTTATCGTCAAAGATAACCCGTTGTTTGATCAATCAACTCCTGCTCTTAATCAACAGAGGGAGACATCAAATCCTGATGTAATGTCAGTCATGATGGCTGATATAGACCCTGATGAAAGAAATGGCAGAGATGGAAAGAAAGATCAATCTCCTAATGAAGGTGGTAGAAGAGAGAGATCTTGA
Protein sequence
MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKDNPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGRDGKKDQSPNEGGRRERS
Homology
BLAST of Tan0015330.1 vs. NCBI nr
Match:
KAA0061113.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 84.7 bits (208), Expect = 5.6e-13
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAASN++ ASN YT P TRSRSKG+ D+ + + +I+K+L E+ K +++K+
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPD 94
NPL+D S + ++ ++ ++PDVMSVMMADI P+
Sbjct: 61 NPLYDNSDSSSSKSKKETHPDVMSVMMADITPE 92
BLAST of Tan0015330.1 vs. NCBI nr
Match:
KAA0032586.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKK ASN++ AS+ YT P TRSRSKG+ D+ + + +I+K+L E+ K +++K+
Sbjct: 1 MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
NPL+D S A ++ ++ ++PDVMSVMMADI
Sbjct: 61 NPLYDNSNSASSKSKKEAHPDVMSVMMADI 89
BLAST of Tan0015330.1 vs. NCBI nr
Match:
XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAAS ++AAS+TYT P TRSRSKG+ D+ A+ +I+K+L E+ K +++K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
NPL++ A ++ + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89
BLAST of Tan0015330.1 vs. NCBI nr
Match:
XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAAS ++AAS+TYT P TRSRSKG+ D+ A+ +I+K+L E+ K +++K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
NPL++ A ++ + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89
BLAST of Tan0015330.1 vs. NCBI nr
Match:
XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])
HSP 1 Score: 78.2 bits (191), Expect = 5.2e-11
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAAS ++AAS+TYT P TRSRSKG+ D+ A+ +I+K+L E+ K +++K+
Sbjct: 1 MASKKAASKSSAASDTYTGPITRSRSKGIIQGQDQ-GSAIAQSILKQLMESPKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
NPL++ A ++ + ++PDVMSVMMAD+
Sbjct: 61 NPLYNDYDSASSRSLKEAHPDVMSVMMADV 89
BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match:
A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)
HSP 1 Score: 84.7 bits (208), Expect = 2.7e-13
Identity = 46/93 (49.46%), Postives = 69/93 (74.19%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAASN++ ASN YT P TRSRSKG+ D+ + + +I+K+L E+ K +++K+
Sbjct: 1 MASKKAASNSSVASNAYTGPITRSRSKGITQEQDQGSN-VAQSILKQLMESLKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPD 94
NPL+D S + ++ ++ ++PDVMSVMMADI P+
Sbjct: 61 NPLYDNSDSSSSKSKKETHPDVMSVMMADITPE 92
BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match:
A0A5D3DC86 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00350 PE=4 SV=1)
HSP 1 Score: 79.7 bits (195), Expect = 8.7e-12
Identity = 44/90 (48.89%), Postives = 66/90 (73.33%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKK ASN++ AS+ YT P TRSRSKG+ D+ + + +I+K+L E+ K +++K+
Sbjct: 1 MASKKDASNSSVASDAYTGPITRSRSKGIIQEQDQGSN-VAQSILKKLMESPKSGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
NPL+D S A ++ ++ ++PDVMSVMMADI
Sbjct: 61 NPLYDNSNSASSKSKKEAHPDVMSVMMADI 89
BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match:
A0A5A7TFN2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00100 PE=4 SV=1)
HSP 1 Score: 78.2 bits (191), Expect = 2.5e-11
Identity = 44/90 (48.89%), Postives = 64/90 (71.11%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAASN++ AS+ YT P TRSRSKG+ D+ + + I+K+L E+ K +++K+
Sbjct: 1 MASKKAASNSSVASDAYTGPITRSRSKGITQEQDQGSN-VAQRILKQLIESPKAGIVIKE 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
N L+D S A N+ ++ ++PDV SVMMADI
Sbjct: 61 NSLYDNSDSASNKSKKEAHPDVKSVMMADI 89
BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match:
A0A5A7VCU1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00120 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 3.3e-11
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKKAAS ++ AS+ YT P TR+RSKG+ D+ D +P +I+K+L E+ K +++K+
Sbjct: 29 MASKKAASRSSVASDGYTGPITRNRSKGITQEQDQGSD-VPQSILKQLMESPKAVIVIKE 88
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADI 91
N L+D S A ++ ++ +PDVMSVMM DI
Sbjct: 89 NSLYDNSDSASSKSKKKEHPDVMSVMMTDI 117
BLAST of Tan0015330.1 vs. ExPASy TrEMBL
Match:
A0A1S3C4J2 (uncharacterized protein LOC103496389 OS=Cucumis melo OX=3656 GN=LOC103496389 PE=4 SV=1)
HSP 1 Score: 77.4 bits (189), Expect = 4.3e-11
Identity = 46/98 (46.94%), Postives = 67/98 (68.37%), Query Frame = 0
Query: 1 MASKKAASNTAAASNTYTSPTTRSRSKGVETSNDRTPDAMPNNIIKRLDEASKGKVIVKD 60
MASKK ASN+ AS+ YT P TRSRSKG+ D+ + + +I+K+L E+ K +++K
Sbjct: 1 MASKKVASNSYVASDAYTGPITRSRSKGIIQEQDQDSNVV-QSILKQLMESPKAGIVIKK 60
Query: 61 NPLFDQSTPALNQQRETSNPDVMSVMMADIDPDERNGR 99
NPL+D S A + ++ ++PDVMSVMMADI E++ R
Sbjct: 61 NPLYDNSDLASSMSKKKAHPDVMSVMMADITDQEQHVR 97
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061113.1 | 5.6e-13 | 49.46 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03782.1 ty3-gyp... | [more] |
| KAA0032586.1 | 1.8e-11 | 48.89 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK20899.1 ty3-gyp... | [more] |
| XP_031739134.1 | 5.2e-11 | 48.89 | uncharacterized protein LOC116402863 [Cucumis sativus] | [more] |
| XP_031742032.1 | 5.2e-11 | 48.89 | uncharacterized protein LOC116404025 [Cucumis sativus] | [more] |
| XP_031742199.1 | 5.2e-11 | 48.89 | uncharacterized protein LOC105435721 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BY54 | 2.7e-13 | 49.46 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DC86 | 8.7e-12 | 48.89 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7TFN2 | 2.5e-11 | 48.89 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7VCU1 | 3.3e-11 | 47.78 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A1S3C4J2 | 4.3e-11 | 46.94 | uncharacterized protein LOC103496389 OS=Cucumis melo OX=3656 GN=LOC103496389 PE=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
