Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA
mRNA sequence
ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA
Coding sequence (CDS)
ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA
Protein sequence
MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGRSGFGGGVGGIGGGGGGVVPFP
Homology
BLAST of Spg023744.1 vs. NCBI nr
Match:
XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])
HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0
Query: 2 AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
AAAPVADPPSS GVDDQKNIFGGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFG
Sbjct: 38 AAAPVADPPSSSGVDDQKNIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFG 97
Query: 62 RSGFGGGVGGIGGGGGGVVPFP 84
GFGGGVGG+GG GGG VPFP
Sbjct: 98 HGGFGGGVGGVGGVGGGFVPFP 119
BLAST of Spg023744.1 vs. NCBI nr
Match:
XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])
HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0
Query: 2 AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
AAAPVA+PPS GGVDDQKNIFGGVG AGMGGYIGGLFPHLGG+GVIGKYGGIGGG G G
Sbjct: 40 AAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVG 99
Query: 62 RSGFGGGVGGIGGGGGGVVPFP 84
GFGGGVGG+GG GGG+VPFP
Sbjct: 100 HGGFGGGVGGVGGIGGGLVPFP 121
BLAST of Spg023744.1 vs. NCBI nr
Match:
XP_008460740.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0032005.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK16826.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])
HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 2 AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
AA+PVA+PP GGVDDQKNIFGGVGG GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39 AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98
Query: 62 RSGFGGGVGGIGGGGGGVVPFP 84
GFG GVGG+GG GGGVVPFP
Sbjct: 99 HGGFGAGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. NCBI nr
Match:
XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
MA APVA PSS V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39 MAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98
Query: 61 GRSGFGGGVGGIGGGGGGVVPFP 84
G GFGGGVGG+GG GGGVVPFP
Sbjct: 99 GHGGFGGGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. NCBI nr
Match:
KAG7026124.1 (hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
+A APVA PSS V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 40 LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 99
Query: 61 GRSGFGGGVGGIGGGGGGVVPFP 84
G GFGGGVGG+GG GGGVVPFP
Sbjct: 100 GHGGFGGGVGGVGGVGGGVVPFP 121
BLAST of Spg023744.1 vs. ExPASy TrEMBL
Match:
A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 6.5e-25
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 2 AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
AA+PVA+PP GGVDDQKNIFGGVGG GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39 AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98
Query: 62 RSGFGGGVGGIGGGGGGVVPFP 84
GFG GVGG+GG GGGVVPFP
Sbjct: 99 HGGFGAGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. ExPASy TrEMBL
Match:
A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)
HSP 1 Score: 122.9 bits (307), Expect = 6.5e-25
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0
Query: 2 AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
AA+PVA+PP GGVDDQKNIFGGVGG GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39 AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98
Query: 62 RSGFGGGVGGIGGGGGGVVPFP 84
GFG GVGG+GG GGGVVPFP
Sbjct: 99 HGGFGAGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. ExPASy TrEMBL
Match:
A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
+A APVA PSS V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39 LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98
Query: 61 GRSGFGGGVGGIGGGGGGVVPFP 84
G GFGGGVGG+GG GGGVVPFP
Sbjct: 99 GHGGFGGGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. ExPASy TrEMBL
Match:
A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0
Query: 1 MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
+A APVA PSS V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39 LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98
Query: 61 GRSGFGGGVGGIGGGGGGVVPFP 84
G GFGGGVGG+GG GGGVVPFP
Sbjct: 99 GHGGFGGGVGGVGGVGGGVVPFP 120
BLAST of Spg023744.1 vs. ExPASy TrEMBL
Match:
A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)
HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0
Query: 1 MAAAPVADPPSSGGVDDQKN-IFGGVGGVAGMGGYIGGLFPHL--GGIGVIGKYGGIGGG 60
+A PVADPPSSGGV +QK IFGGVGG AGMGG++GGLFPHL GG+G IGK+GGIGGG
Sbjct: 40 LAPTPVADPPSSGGVREQKQIIFGGVGGFAGMGGFVGGLFPHLGFGGVGGIGKFGGIGGG 99
Query: 61 IGF------GRSGFGGGVGGIGGGGGGV---VPFP 84
G G G GGG GG+GGG GGV +PFP
Sbjct: 100 TGIIPGGVGGIGGVGGGAGGVGGGVGGVGGGLPFP 134
BLAST of Spg023744.1 vs. TAIR 10
Match:
AT1G04660.1 (glycine-rich protein )
HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 45/81 (55.56%), Postives = 51/81 (62.96%), Query Frame = 0
Query: 4 APVADPPSSGGVDDQKNIFG--GVGGVAGMGGY--IGGL-FPHLGGIGVIGKYGGIGGGI 63
A AD V D+K I G GVGG AG+GG +GGL P +GG+G IGKYGGIGG
Sbjct: 46 AKAADQLPPKSVGDKKCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAA 105
Query: 64 GFGRSGFGGGVGGIGGGGGGV 80
G G GGVGG+GG GGGV
Sbjct: 106 GIGGFHSIGGVGGLGGVGGGV 126
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038906734.1 | 2.2e-27 | 90.24 | glycine-rich protein 5-like [Benincasa hispida] | [more] |
XP_031736587.1 | 3.5e-25 | 85.37 | glycine-rich protein 5-like isoform X3 [Cucumis sativus] | [more] |
XP_008460740.1 | 1.3e-24 | 82.93 | PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0... | [more] |
XP_023515156.1 | 4.3e-23 | 84.34 | glycine-rich protein 23-like [Cucurbita pepo subsp. pepo] | [more] |
KAG7026124.1 | 9.6e-23 | 83.13 | hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3D259 | 6.5e-25 | 82.93 | Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=... | [more] |
A0A1S3CEA9 | 6.5e-25 | 82.93 | glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
A0A6J1KIQ3 | 4.6e-23 | 83.13 | glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=... | [more] |
A0A6J1HL05 | 4.6e-23 | 83.13 | glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S... | [more] |
A0A6J1CDU6 | 1.8e-14 | 65.26 | WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009... | [more] |
Match Name | E-value | Identity | Description | |
AT1G04660.1 | 1.6e-04 | 55.56 | glycine-rich protein | [more] |