Spg023744 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg023744
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionglycine-rich protein 5-like
Locationscaffold13: 5808506 .. 5808757 (+)
RNA-Seq ExpressionSpg023744
SyntenySpg023744
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA

mRNA sequence

ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA

Coding sequence (CDS)

ATGGCAGCGGCTCCGGTAGCAGATCCACCGAGCAGCGGTGGCGTTGACGACCAAAAGAACATCTTTGGTGGGGTTGGAGGGGTTGCAGGGATGGGTGGCTACATTGGAGGATTGTTTCCACATCTTGGCGGGATTGGTGTAATCGGCAAGTACGGCGGAATTGGTGGTGGGATTGGCTTCGGTCGCAGTGGCTTTGGAGGCGGAGTTGGTGGCATCGGCGGCGGAGGTGGCGGAGTTGTGCCATTTCCTTGA

Protein sequence

MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFGRSGFGGGVGGIGGGGGGVVPFP
Homology
BLAST of Spg023744 vs. NCBI nr
Match: XP_038906734.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.2e-27
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 0

Query: 2   AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
           AAAPVADPPSS GVDDQKNIFGGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGFG
Sbjct: 38  AAAPVADPPSSSGVDDQKNIFGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGFG 97

Query: 62  RSGFGGGVGGIGGGGGGVVPFP 84
             GFGGGVGG+GG GGG VPFP
Sbjct: 98  HGGFGGGVGGVGGVGGGFVPFP 119

BLAST of Spg023744 vs. NCBI nr
Match: XP_031736587.1 (glycine-rich protein 5-like isoform X3 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 3.5e-25
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 2   AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
           AAAPVA+PPS GGVDDQKNIFGGVG  AGMGGYIGGLFPHLGG+GVIGKYGGIGGG G G
Sbjct: 40  AAAPVAEPPSRGGVDDQKNIFGGVGAFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGFGVG 99

Query: 62  RSGFGGGVGGIGGGGGGVVPFP 84
             GFGGGVGG+GG GGG+VPFP
Sbjct: 100 HGGFGGGVGGVGGIGGGLVPFP 121

BLAST of Spg023744 vs. NCBI nr
Match: XP_008460740.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0032005.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK16826.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.9 bits (307), Expect = 1.3e-24
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 2   AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
           AA+PVA+PP  GGVDDQKNIFGGVGG  GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39  AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98

Query: 62  RSGFGGGVGGIGGGGGGVVPFP 84
             GFG GVGG+GG GGGVVPFP
Sbjct: 99  HGGFGAGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. NCBI nr
Match: XP_023515156.1 (glycine-rich protein 23-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 117.9 bits (294), Expect = 4.3e-23
Identity = 70/83 (84.34%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
           MA APVA  PSS  V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39  MAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98

Query: 61  GRSGFGGGVGGIGGGGGGVVPFP 84
           G  GFGGGVGG+GG GGGVVPFP
Sbjct: 99  GHGGFGGGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. NCBI nr
Match: KAG7026124.1 (hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 9.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
           +A APVA  PSS  V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 40  LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 99

Query: 61  GRSGFGGGVGGIGGGGGGVVPFP 84
           G  GFGGGVGG+GG GGGVVPFP
Sbjct: 100 GHGGFGGGVGGVGGVGGGVVPFP 121

BLAST of Spg023744 vs. ExPASy TrEMBL
Match: A0A5D3D259 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001010 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.5e-25
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 2   AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
           AA+PVA+PP  GGVDDQKNIFGGVGG  GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39  AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98

Query: 62  RSGFGGGVGGIGGGGGGVVPFP 84
             GFG GVGG+GG GGGVVPFP
Sbjct: 99  HGGFGAGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. ExPASy TrEMBL
Match: A0A1S3CEA9 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103499502 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.5e-25
Identity = 68/82 (82.93%), Postives = 72/82 (87.80%), Query Frame = 0

Query: 2   AAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGFG 61
           AA+PVA+PP  GGVDDQKNIFGGVGG  GMGGYIGGLFPHLGG+G IGKYGGIGGG GFG
Sbjct: 39  AASPVAEPPCRGGVDDQKNIFGGVGGFTGMGGYIGGLFPHLGGVGTIGKYGGIGGGFGFG 98

Query: 62  RSGFGGGVGGIGGGGGGVVPFP 84
             GFG GVGG+GG GGGVVPFP
Sbjct: 99  HGGFGAGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. ExPASy TrEMBL
Match: A0A6J1KIQ3 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
           +A APVA  PSS  V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39  LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98

Query: 61  GRSGFGGGVGGIGGGGGGVVPFP 84
           G  GFGGGVGG+GG GGGVVPFP
Sbjct: 99  GHGGFGGGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. ExPASy TrEMBL
Match: A0A6J1HL05 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.6e-23
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1   MAAAPVADPPSSGGVDDQKNIFGGVGGVAGMGGYIGGLFPHLGGIGVIGKYGGIGGGIGF 60
           +A APVA  PSS  V DQKNI+GGVGG AGMGGYIGGLFPHLGG+GVIGKYGGIGGGIGF
Sbjct: 39  LAVAPVAGQPSSNDV-DQKNIYGGVGGFAGMGGYIGGLFPHLGGVGVIGKYGGIGGGIGF 98

Query: 61  GRSGFGGGVGGIGGGGGGVVPFP 84
           G  GFGGGVGG+GG GGGVVPFP
Sbjct: 99  GHGGFGGGVGGVGGVGGGVVPFP 120

BLAST of Spg023744 vs. ExPASy TrEMBL
Match: A0A6J1CDU6 (WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009813 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 62/95 (65.26%), Postives = 70/95 (73.68%), Query Frame = 0

Query: 1   MAAAPVADPPSSGGVDDQKN-IFGGVGGVAGMGGYIGGLFPHL--GGIGVIGKYGGIGGG 60
           +A  PVADPPSSGGV +QK  IFGGVGG AGMGG++GGLFPHL  GG+G IGK+GGIGGG
Sbjct: 40  LAPTPVADPPSSGGVREQKQIIFGGVGGFAGMGGFVGGLFPHLGFGGVGGIGKFGGIGGG 99

Query: 61  IGF------GRSGFGGGVGGIGGGGGGV---VPFP 84
            G       G  G GGG GG+GGG GGV   +PFP
Sbjct: 100 TGIIPGGVGGIGGVGGGAGGVGGGVGGVGGGLPFP 134

BLAST of Spg023744 vs. TAIR 10
Match: AT1G04660.1 (glycine-rich protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.6e-04
Identity = 45/81 (55.56%), Postives = 51/81 (62.96%), Query Frame = 0

Query: 4   APVADPPSSGGVDDQKNIFG--GVGGVAGMGGY--IGGL-FPHLGGIGVIGKYGGIGGGI 63
           A  AD      V D+K I G  GVGG AG+GG   +GGL  P +GG+G IGKYGGIGG  
Sbjct: 46  AKAADQLPPKSVGDKKCIGGVAGVGGFAGVGGVAGVGGLGMPLIGGLGGIGKYGGIGGAA 105

Query: 64  GFGRSGFGGGVGGIGGGGGGV 80
           G G     GGVGG+GG GGGV
Sbjct: 106 GIGGFHSIGGVGGLGGVGGGV 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038906734.12.2e-2790.24glycine-rich protein 5-like [Benincasa hispida][more]
XP_031736587.13.5e-2585.37glycine-rich protein 5-like isoform X3 [Cucumis sativus][more]
XP_008460740.11.3e-2482.93PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo] >KAA0... [more]
XP_023515156.14.3e-2384.34glycine-rich protein 23-like [Cucurbita pepo subsp. pepo][more]
KAG7026124.19.6e-2383.13hypothetical protein SDJN02_12623, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D2596.5e-2582.93Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3CEA96.5e-2582.93glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A6J1KIQ34.6e-2383.13glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111494807 PE=4 SV=... [more]
A0A6J1HL054.6e-2383.13glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464508 PE=4 S... [more]
A0A6J1CDU61.8e-1465.26WW domain-containing protein C660.06 OS=Momordica charantia OX=3673 GN=LOC111009... [more]
Match NameE-valueIdentityDescription
AT1G04660.11.6e-0455.56glycine-rich protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg023744.1Spg023744.1mRNA