Spg010408.1 (mRNA) Sponge gourd (cylindrica) v1

Overview


Name	Spg010408.1
Type	mRNA
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold5: 11304368 .. 11306318 (-)
Sequence length	852
RNA-Seq Expression	Spg010408.1
Synteny	Spg010408.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCTCAGCACCCCCCCTTGCGTTTGCGTGTGTTCCAGCCAGCCCCATCCGACTTCCTTCTTCCTTCCCGTCGGTGTCAGGACCCACAGGCCGATTCCGGCGTCTTCCTCCCTGCGGTGTGTTGCGCCGCCACCAGCAGCCAAGCCCCGCCGTCCCTCTTCATCTCTTCCTCCCTCGCGTGTTGTTCGGGTTGCAGCAGGTCCCTCTTCGCGTGAGCAGTCACAGTTCCCGTCGTCTATCTATCTCTCTCTCCCTCTCTCGTTCTTCCTCACGCTGAAGCCACAGCTCTCTCTCTCTCCCATGTTCAGTCGCCGGCAGCAGCAGACCCGTGGCCCCTGTATTCACGAGCGTCGGCCAGCACCCACAGCTTCGGTTTTTCACCTTCAAACTCGCGTGTAAGGTCTCTTTTTCTCTCGATTCTCTTTCAAGTTCCTCAAGCAGCGAGTTTAATCCTCTGTCTTCTCTTGTTTTTGGCTGGGCTAGTGAGTAGAAGCTGGAATCTTCGTTGTTCTGGTGTTTAGGCGCGTTCGGGCTGATTTAAGGATCGTTTCGGCGTGCTTAGGCTCTTTCGGTAAGCTCTCAGCATTACCCATGCTTTATAAACCTCAAATTTAGATTACCCACTCTTGTTCGCCCTTAGAATGGAGCGTTTGGTTTGATTTCTTGATTTTCCAATGCTGTGCAGTGCCGTCTTGGGTTTGAAATCATTCTTGCCTTGTGACCCATCATCCGTTTAGCCTTAAACTTGAACAACCAGTGCCTAGGGTCTCTAAGCAAGTGGTTTTAAACCTCTTTGCTTGCTGGACAGCACGTGTTCGAGGTCTTTCAGACGCTGAACGGTAAATTCCAGCACCCCTAGTTCTTTTTCTCAAGTCTATTAGGTGTTTTAAATCTATTTCCTAACCCTTAGAAATCATTGCTTGTAGTTTGAGCTCTTTAGGCTCTTCCAGTTGGTTCTGTTAGTCTCTTAGGATCGTTTAAGAGTGTTAGAGCTTCCGGTAAGTAGTTCTTACTTGCTGAAGTCTGTTTGACTGTGTGATGCATGCTGAATGTTTACTTGCTTTATAACTACTCTCATGATTATTGCTTCTCTGAATATATGTACATATATATGATTTCGTTGAAAAGCATGACTGTTGTTGCGTGTTGATTTGATGTAAAGCATGTTGGCTCTGTTTTGCATTCGTGAGTCAAGCATGAGTTGAGAGATGTGGTCACATGTATAATGCTTAGTGGGCATGATTATGAGTCTAGAAGCATGTTGCAGGGCATATGCATTCTAGTAGATGTGAGATATAGGTCAGGGACCTAAAGTGTGAAAGAAAGGAAAGTTGGGTGAGTGTCAGTGCACCTCAGGTACAAATGGTCGAGGGGTGGCACGTCACCATTGGTTTAAGAGGAGCATCGAGGCCTTGGGTACAAATGGTCAAATGTCGATGTGATGAGTCTAGAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATGCTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGGCGATACACAGTTCGGGGCCTTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATTAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCGTTGAGTGAGCTCGTGGAGCTTGAGTGGTTAGCAAGTTGCATATAGAGAGATGCATGAGTTATGGCTTAGGAGAGTCATTTGTTTTTTACTAGCTTTTGAGCATGACATTGTGTTTACCGCTTTTAAGAAGCATGTTGTTTGCGCATGAAGAGCATGTTGTTTGCTTGTTTGCTGTTTGATGGCTTCTCAGGTAGGGGCTGCTTACCAGTACCTTAGTGTACTGACCCCCTCCCCTCTCTCTCCCCCCAACTACCAGATTTTGCAGGTTATGAGGACTGTGTGGACCATGGTGATGCGGAGGAGGCATACGAGGAAGGACCTTAG

mRNA sequence

CCGCTCAGCACCCCCCCTTGCGTTTGCGTGTGTTCCAGCCAGCCCCATCCGACTTCCTTCTTCCTTCCCGTCGGTGTCAGGACCCACAGGCCGATTCCGGCGTCTTCCTCCCTGCGGTGTGTTGCGCCGCCACCAGCAGCCAAGCCCCGCCGTCCCTCTTCATCTCTTCCTCCCTCGCGTGTTGTTCGGGTTGCAGCAGGTCCCTCTTCGCGTGAGCAGTCACAGTTCCCGTCGTCTATCTATCTCTCTCTCCCTCTCTCGTTCTTCCTCACGCTGAAGCCACAGCTCTCTCTCTCTCCCATGTTCAGTCGCCGGCAGCAGCAGACCCGTGGCCCCTGTATTCACGAGCGTCGGCCAGCACCCACAGCTTCGGTTTTTCACCTTCAAACTCGCGTGCGCGTTCGGGCTGATTTAAGGATCGTTTCGGCGTGCTTAGGCTCTTTCGCACGTGTTCGAGGTCTTTCAGACGCTGAACGTCTCTTAGGATCGTTTAAGAGTGTTAGAGCTTCCGTCAAGCATGAGTTGAGAGATGTGGTCACATGTATAATGCTTAGTGGGCATGATTATGAGTCTAGAAGCATGTTGCAGGGCATATGCATTCTAGTAGATAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATGCTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGGCGATACACAGTTCGGGGCCTTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATTAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCATTTTGCAGGTTATGAGGACTGTGTGGACCATGGTGATGCGGAGGAGGCATACGAGGAAGGACCTTAG

Coding sequence (CDS)

CCGCTCAGCACCCCCCCTTGCGTTTGCGTGTGTTCCAGCCAGCCCCATCCGACTTCCTTCTTCCTTCCCGTCGGTGTCAGGACCCACAGGCCGATTCCGGCGTCTTCCTCCCTGCGGTGTGTTGCGCCGCCACCAGCAGCCAAGCCCCGCCGTCCCTCTTCATCTCTTCCTCCCTCGCGTGTTGTTCGGGTTGCAGCAGGTCCCTCTTCGCGTGAGCAGTCACAGTTCCCGTCGTCTATCTATCTCTCTCTCCCTCTCTCGTTCTTCCTCACGCTGAAGCCACAGCTCTCTCTCTCTCCCATGTTCAGTCGCCGGCAGCAGCAGACCCGTGGCCCCTGTATTCACGAGCGTCGGCCAGCACCCACAGCTTCGGTTTTTCACCTTCAAACTCGCGTGCGCGTTCGGGCTGATTTAAGGATCGTTTCGGCGTGCTTAGGCTCTTTCGCACGTGTTCGAGGTCTTTCAGACGCTGAACGTCTCTTAGGATCGTTTAAGAGTGTTAGAGCTTCCGTCAAGCATGAGTTGAGAGATGTGGTCACATGTATAATGCTTAGTGGGCATGATTATGAGTCTAGAAGCATGTTGCAGGGCATATGCATTCTAGTAGATAAAGCAAGTGTTGGGCGCCTGGGGAAGGGCCAATGCTTTGCTAAGTCATCGGTGCGCCTTGGGTACAAATGGTCAAGGGGCGATACACAGTTCGGGGCCTTGGGTACAAATGGTCAGGGGACAGTGCGACTCGAAGGATTAGTCTTGGAGAGCCATGTGAGGGCTAAATATGAGCATTTTGCAGGTTATGAGGACTGTGTGGACCATGGTGATGCGGAGGAGGCATACGAGGAAGGACCTTAG

Protein sequence

PLSTPPCVCVCSSQPHPTSFFLPVGVRTHRPIPASSSLRCVAPPPAAKPRRPSSSLPPSRVVRVAAGPSSREQSQFPSSIYLSLPLSFFLTLKPQLSLSPMFSRRQQQTRGPCIHERRPAPTASVFHLQTRVRVRADLRIVSACLGSFARVRGLSDAERLLGSFKSVRASVKHELRDVVTCIMLSGHDYESRSMLQGICILVDKASVGRLGKGQCFAKSSVRLGYKWSRGDTQFGALGTNGQGTVRLEGLVLESHVRAKYEHFAGYEDCVDHGDAEEAYEEGP

Homology

The following BLAST results are available for this feature:

BLAST of Spg010408.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg010408.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg010408.1 vs.


Match Name	E-value	Identity	Description

BLAST of Spg010408.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spg010408	Spg010408	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11304368..11304435	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11304693..11304867	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11305031..11305128	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11305321..11305355	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11305480..11305510	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11305748..11305797	CDS
Spg010408.1-cds	Spg010408.1-cds-scaffold5:11305924..11306318	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spg010408.1	Spg010408.1-protein	polypeptide