Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAAAGTGAAAAATGGGTTGGAAGACAAATGTATGAAGAAAAATATTTGGCACATTGAATGTTCAAAGTCTCTTAAGTTAAGGACATAATCTTGTCTTATTGCCATTTTCTACCAAAAGACTTAGACAAATCTTTGGGATATGCAATTGGGTCACTTGTCAAGAGCTTAACAATTGACTTCAATTTCAAAAAGACTTCGGAAAAAAAAAAAGTGACAAATTATGCATGCTTTAATTAGCAATAAAAGTATGTGTCTTCAATATTCATAATTACAATTGTTTCATTTTTTTAAATTATTTTTTTCCTAGATTTGAACTTCTAGTATAAAATTTTTATTGACCGCTAGAGATTGGCTTGGCCTAATAATTATTAGAGCAAGCATAAAAGTAAAGAAACTTTGGGAGAATGAGTTTCGGACCTATGATGGGTACCATAAGATATCAAAATCTTACAAGTAAGTTGAAACCGGATAAAATTACATATTAAGAGTTTTTTTTTCTCATTTTAAGAATATGTATATTTAATTTGTTTTCTATTTTTTTTAAAACGTTTAACTTAGCCAATTTTAAGAAAATTAAAATTGATTTTTGAGAACTAACGTTGTTTTATTTTATTATAATTATTGTTATCCATACTCTTAATTTCCTTGCAAACAATCCTTAAAAAGTAATCTTAAAATAAAAATTAATTTATGAAAGGAAATAATATTTAGTGCCCAATTCACATCCATTAATTTTTTTTAAAAAAATTAACTTATTACTCACAATTTCTTTTTCTCTTATTCTACTTTTTAAAAACATTTTTAAAATCCAATTCAAAATTTAAAAGCTAAAAAAAATAGTTTTCAAAAACTTATTTTTAGTTTTAAAATTTGTCTAGAAATTCAAATGCCCAAATTTTTTAAATTAAAAAATCAAAATCAAAATCGTTATTCAACCTGATGATAATAAATTTTTTTAGAAAAATTGGAAATTAAAACCATATTTGAAAAAAGGTGGAAGAGAAAAGTCACTTACCATTTCCATTTCCATTTCCATTTCCAGATTCCTGCGAGTTAGCTGCACCTCTGGTGAAGCGCGCGTAGCATTTGGCCAAGTACACATCCCCCCAAGCGGATGGCCCACAGGCAGATTTCAGCCGTCCGATGGCCTCAGAGATGCAATCCTGGCAATCGCTCGGACTCAAATCCCCCACGCACTGCGCCGTGCTCTGTACTTCCCCGGCTCCACCCACCCTGTAGGTCCCACCACCCGTCGCCAAATACCCCAGCGCCGCATCAAGCCGGGTCAACGCGTCCGAGTCAGACCCAATCGACGGCCCACATTTCCTCACCACCACCGTCTTGTCCTCCACTCCGAAGAAGCTTCTGTTATCGTACTTGATGAAGCACCCCTCCAGCTGCAACGCGCCGCCGCATGCGTCGGTGCAAACAGTCCCCAGTCGACTCACCGCCCCGGCGACGCACCGCGAGCAGTCGCCGTAGTTGAGGTCCCCGCGGCATTGGTAGAGCCCGGAGATGGTGTACTGTGGGGCGGAGCCGACGACAGTGAAGTTGCCGTAGGAGGCGGAAGCCGCCGAGCTTACAAGGCGGCCGAGGAGCAAGTTCAGGTTCGAATCGTACGGTGACCCCGGAATGTATTTCTGCAGAGTACACCCACCGAACACGAAGCTGTCTATGGAAGAAGACGACGGAGCTGTGAGAATTACGACAGCTCCATAGAAAAACGTCAGAAAAGAAGACAGAGAACGAACTCTTCCACTCGCCGACATGTCGAAATAGAGAGAGAGAGCTTTCGCAGAGAATTTACGTGGAGAAGACGATGA
mRNA sequence
ATGATTGAAAGTGAAAAATGGGTTGGAAGACAAATCTGCACCTCTGGTGAAGCGCGCGTAGCATTTGGCCAAGTACACATCCCCCCAAGCGGATGGCCCACAGGCAGATTTCAGCCGTCCGATGGCCTCAGAGATGCAATCCTGGCAATCGCTCGGACTCAAATCCCCCACGCACTGCGCCGTGCTCTGTACTTCCCCGGCTCCACCCACCCTGTAGGTCCCACCACCCGTCGCCAAATACCCCAGCGCCGCATCAAGCCGGGTCAACGCGTCCGAGTCAGACCCAATCGACGGCCCACATTTCCTCACCACCACCGTCTTGTCCTCCACTCCGAAGAAGCTTCTGTTATCGTACTTGATGAAGCACCCCTCCAGCTGCAACGCGCCGCCGCATGCGTCGGTGCAAACAGTCCCCAGTCGACTCACCGCCCCGGCGACGCACCGCGAGCAGTCGCCGTAGTTGAGGTCCCCGCGGCATTGGTAGAGCCCGGAGATGGTGTACTGTGGGGCGGAGCCGACGACAGTGAAGTTGCCGTAGGAGGCGGAAGCCGCCGAGCTTACAAGGCGGCCGAGGAGCAAGTTCAGAGTACACCCACCGAACACGAAGCTGTCTATGGAAGAAGACGACGGAGCTGTGAGAATTACGACAGCTCCATAGAAAAACGTCAGAAAAGAAGACAGAGAACGAACTCTTCCACTCGCCGACATGTCGAAATAGAGAGAGAGAGCTTTCGCAGAGAATTTACGTGGAGAAGACGATGA
Coding sequence (CDS)
ATGATTGAAAGTGAAAAATGGGTTGGAAGACAAATCTGCACCTCTGGTGAAGCGCGCGTAGCATTTGGCCAAGTACACATCCCCCCAAGCGGATGGCCCACAGGCAGATTTCAGCCGTCCGATGGCCTCAGAGATGCAATCCTGGCAATCGCTCGGACTCAAATCCCCCACGCACTGCGCCGTGCTCTGTACTTCCCCGGCTCCACCCACCCTGTAGGTCCCACCACCCGTCGCCAAATACCCCAGCGCCGCATCAAGCCGGGTCAACGCGTCCGAGTCAGACCCAATCGACGGCCCACATTTCCTCACCACCACCGTCTTGTCCTCCACTCCGAAGAAGCTTCTGTTATCGTACTTGATGAAGCACCCCTCCAGCTGCAACGCGCCGCCGCATGCGTCGGTGCAAACAGTCCCCAGTCGACTCACCGCCCCGGCGACGCACCGCGAGCAGTCGCCGTAGTTGAGGTCCCCGCGGCATTGGTAGAGCCCGGAGATGGTGTACTGTGGGGCGGAGCCGACGACAGTGAAGTTGCCGTAGGAGGCGGAAGCCGCCGAGCTTACAAGGCGGCCGAGGAGCAAGTTCAGAGTACACCCACCGAACACGAAGCTGTCTATGGAAGAAGACGACGGAGCTGTGAGAATTACGACAGCTCCATAGAAAAACGTCAGAAAAGAAGACAGAGAACGAACTCTTCCACTCGCCGACATGTCGAAATAGAGAGAGAGAGCTTTCGCAGAGAATTTACGTGGAGAAGACGATGA
Protein sequence
MIESEKWVGRQICTSGEARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVGPTTRRQIPQRRIKPGQRVRVRPNRRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGANSPQSTHRPGDAPRAVAVVEVPAALVEPGDGVLWGGADDSEVAVGGGSRRAYKAAEEQVQSTPTEHEAVYGRRRRSCENYDSSIEKRQKRRQRTNSSTRRHVEIERESFRREFTWRRR
Homology
BLAST of Sgr017050.1 vs. NCBI nr
Match:
KYP75953.1 (hypothetical protein KK1_020165 [Cajanus cajan])
HSP 1 Score: 107.1 bits (266), Expect = 2.3e-19
Identity = 81/180 (45.00%), Postives = 94/180 (52.22%), Query Frame = 0
Query: 17 EARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVGPTT 76
E V G+ HIP G T QPSDGL AIL +A+TQIP LR A + T+P P
Sbjct: 7 EPGVTLGEEHIPIIGDRTVAPQPSDGLPHAILTLAKTQIPATLRHAPHLTRPTNPKVPAR 66
Query: 77 RRQIPQRRIKPGQRVRVRPN-RRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGA 136
RQ Q R+ R PN RPT HHRLVL E+ V+VL APLQL RAAA A
Sbjct: 67 TRQPAQHRV---PLARTGPNGPRPTLLQHHRLVLQPEKRVVVVLHVAPLQLHRAAARRRA 126
Query: 137 NSPQSTHRPGDAPRAVAVVEVPAALVEPGDGVLWGGADDSEVAVGGGSRRAYKAAEEQVQ 196
P + DA A+ EV AALVE V GA EV VGG R + EE+V+
Sbjct: 127 ELPGALDGARDAGGALRHGEVAAALVEAVGHVGGAGAHHGEVVVGGVRGRVDQRGEERVE 183
BLAST of Sgr017050.1 vs. NCBI nr
Match:
GER29805.1 (CUE domain-containing protein 1 [Striga asiatica])
HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 63/155 (40.65%), Postives = 78/155 (50.32%), Query Frame = 0
Query: 19 RVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVGPTTRR 78
RVA + HIPP QP DGLR A LA+A TQIP ALR + P HP RR
Sbjct: 5 RVALSKKHIPPQRGRALVPQPLDGLRHAALALAPTQIPRALRHTPHLPRHPHPEILPPRR 64
Query: 79 QIPQRRIKPGQRVRVRPNRRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGANSP 138
Q+ Q + P + V + RPT HR +L E V+V EA ++LQ A GA
Sbjct: 65 QVRQHAVLPREHVPAGGHGRPTSVGRHRPILLPHEGRVVVPHEAAVELQGGAGGPGAGGG 124
Query: 139 QSTHRPGDAPRAVAVVEVPAALV-----EPGDGVL 169
++ G+AP AV EV AAL EPG +L
Sbjct: 125 EAGDGGGNAPPAVGAGEVSAALTASPGPEPGTEIL 159
BLAST of Sgr017050.1 vs. NCBI nr
Match:
PON33852.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_349250 [Parasponia andersonii])
HSP 1 Score: 70.1 bits (170), Expect = 3.1e-08
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query: 14 TSGEARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVG 73
T E RVA GQVH+ P G PT QP D +R+AILA+ Q+PHALR L+ PG+ PV
Sbjct: 39 TFREPRVALGQVHVTPGGGPTIGPQPLDRIREAILALGWAQVPHALRHPLHVPGAADPVQ 98
Query: 74 PT 76
P+
Sbjct: 99 PS 100
BLAST of Sgr017050.1 vs. NCBI nr
Match:
PON47772.1 (hypothetical protein TorRG33x02_322240 [Trema orientale])
HSP 1 Score: 68.2 bits (165), Expect = 1.2e-07
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 0
Query: 14 TSGEARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVG 73
T E RVA GQVH+ P G PT QP D +R+AILA+ Q+PHALR L PG+ PV
Sbjct: 39 TFREPRVALGQVHVTPGGGPTIGPQPLDRVREAILALGWAQVPHALRHPLQVPGAADPVQ 98
Query: 74 P 75
P
Sbjct: 99 P 99
BLAST of Sgr017050.1 vs. ExPASy TrEMBL
Match:
A0A151U9H3 (Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_020165 PE=4 SV=1)
HSP 1 Score: 107.1 bits (266), Expect = 1.1e-19
Identity = 81/180 (45.00%), Postives = 94/180 (52.22%), Query Frame = 0
Query: 17 EARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVGPTT 76
E V G+ HIP G T QPSDGL AIL +A+TQIP LR A + T+P P
Sbjct: 7 EPGVTLGEEHIPIIGDRTVAPQPSDGLPHAILTLAKTQIPATLRHAPHLTRPTNPKVPAR 66
Query: 77 RRQIPQRRIKPGQRVRVRPN-RRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGA 136
RQ Q R+ R PN RPT HHRLVL E+ V+VL APLQL RAAA A
Sbjct: 67 TRQPAQHRV---PLARTGPNGPRPTLLQHHRLVLQPEKRVVVVLHVAPLQLHRAAARRRA 126
Query: 137 NSPQSTHRPGDAPRAVAVVEVPAALVEPGDGVLWGGADDSEVAVGGGSRRAYKAAEEQVQ 196
P + DA A+ EV AALVE V GA EV VGG R + EE+V+
Sbjct: 127 ELPGALDGARDAGGALRHGEVAAALVEAVGHVGGAGAHHGEVVVGGVRGRVDQRGEERVE 183
BLAST of Sgr017050.1 vs. ExPASy TrEMBL
Match:
A0A5A7PAB7 (CUE domain-containing protein 1 OS=Striga asiatica OX=4170 GN=STAS_05698 PE=4 SV=1)
HSP 1 Score: 91.3 bits (225), Expect = 6.3e-15
Identity = 63/155 (40.65%), Postives = 78/155 (50.32%), Query Frame = 0
Query: 19 RVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVGPTTRR 78
RVA + HIPP QP DGLR A LA+A TQIP ALR + P HP RR
Sbjct: 5 RVALSKKHIPPQRGRALVPQPLDGLRHAALALAPTQIPRALRHTPHLPRHPHPEILPPRR 64
Query: 79 QIPQRRIKPGQRVRVRPNRRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGANSP 138
Q+ Q + P + V + RPT HR +L E V+V EA ++LQ A GA
Sbjct: 65 QVRQHAVLPREHVPAGGHGRPTSVGRHRPILLPHEGRVVVPHEAAVELQGGAGGPGAGGG 124
Query: 139 QSTHRPGDAPRAVAVVEVPAALV-----EPGDGVL 169
++ G+AP AV EV AAL EPG +L
Sbjct: 125 EAGDGGGNAPPAVGAGEVSAALTASPGPEPGTEIL 159
BLAST of Sgr017050.1 vs. ExPASy TrEMBL
Match:
A0A2N9EUC3 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10268 PE=4 SV=1)
HSP 1 Score: 75.9 bits (185), Expect = 2.8e-10
Identity = 53/118 (44.92%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 82 QRRIKPGQRVRVRPNRRPTFPHHHRLVLHSEEASVIVLDEAPLQLQRAAACVGANSPQST 141
Q I P Q VRV PNRR TF H LVLH+++ SVI+ DE +LQRA V A + T
Sbjct: 11 QHSISPSQHVRVIPNRRSTFLDHLGLVLHTQKRSVIIFDETAFELQRATERVDAEGAELT 70
Query: 142 HRPGDAPRAVAVVEVPAALVEPGDGVLWG-GADDSEVAVGGGSRRAYKAAEEQVQSTP 199
H DA A+ EV AAL E +GVLW + D EV V S A A +TP
Sbjct: 71 HCESDAVSAIVSHEVAAALEESVEGVLWACDSWDGEVIVETSSPMAILQAPATNPATP 128
BLAST of Sgr017050.1 vs. ExPASy TrEMBL
Match:
A0A2P5ABD0 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_349250 PE=4 SV=1)
HSP 1 Score: 70.1 bits (170), Expect = 1.5e-08
Identity = 33/62 (53.23%), Postives = 41/62 (66.13%), Query Frame = 0
Query: 14 TSGEARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVG 73
T E RVA GQVH+ P G PT QP D +R+AILA+ Q+PHALR L+ PG+ PV
Sbjct: 39 TFREPRVALGQVHVTPGGGPTIGPQPLDRIREAILALGWAQVPHALRHPLHVPGAADPVQ 98
Query: 74 PT 76
P+
Sbjct: 99 PS 100
BLAST of Sgr017050.1 vs. ExPASy TrEMBL
Match:
A0A2P5BG69 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_322240 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 33/61 (54.10%), Postives = 39/61 (63.93%), Query Frame = 0
Query: 14 TSGEARVAFGQVHIPPSGWPTGRFQPSDGLRDAILAIARTQIPHALRRALYFPGSTHPVG 73
T E RVA GQVH+ P G PT QP D +R+AILA+ Q+PHALR L PG+ PV
Sbjct: 39 TFREPRVALGQVHVTPGGGPTIGPQPLDRVREAILALGWAQVPHALRHPLQVPGAADPVQ 98
Query: 74 P 75
P
Sbjct: 99 P 99
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KYP75953.1 | 2.3e-19 | 45.00 | hypothetical protein KK1_020165 [Cajanus cajan] | [more] |
| GER29805.1 | 1.3e-14 | 40.65 | CUE domain-containing protein 1 [Striga asiatica] | [more] |
| PON33852.1 | 3.1e-08 | 53.23 | LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_349250 [Parasponia anderson... | [more] |
| PON47772.1 | 1.2e-07 | 54.10 | hypothetical protein TorRG33x02_322240 [Trema orientale] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A151U9H3 | 1.1e-19 | 45.00 | Uncharacterized protein OS=Cajanus cajan OX=3821 GN=KK1_020165 PE=4 SV=1 | [more] |
| A0A5A7PAB7 | 6.3e-15 | 40.65 | CUE domain-containing protein 1 OS=Striga asiatica OX=4170 GN=STAS_05698 PE=4 SV... | [more] |
| A0A2N9EUC3 | 2.8e-10 | 44.92 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS10268 PE=4 SV=1 | [more] |
| A0A2P5ABD0 | 1.5e-08 | 53.23 | Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_349250 PE... | [more] |
| A0A2P5BG69 | 5.8e-08 | 54.10 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_322240 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| Sgr017050 | Sgr017050 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sgr017050.1.exon3 | Sgr017050.1.exon3 | exon |
| Sgr017050.1.exon2 | Sgr017050.1.exon2 | exon |
| Sgr017050.1.exon1 | Sgr017050.1.exon1 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| cds.Sgr017050.1 | cds.Sgr017050.1_3 | CDS |
| cds.Sgr017050.1 | cds.Sgr017050.1_2 | CDS |
| cds.Sgr017050.1 | cds.Sgr017050.1 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| Sgr017050.1 | Sgr017050.1-protein | polypeptide |
