Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACGTTTCTATGTTATGCTTATTTTTAATATGTTCCCTATGATGTGCACGTAATAAATAGCTTAGACATCAACTTGAGATTCTGGGTTGACCTAGTTTATTTCTTTTTTCAATTGGTATTAGAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA
mRNA sequence
ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA
Coding sequence (CDS)
ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA
Protein sequence
MNGLQIFHGLFEKSIYDLFERVADPPNVDAVASNWVTNSVDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTSLKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKMSKLQF
Homology
BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match:
A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)
HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
VD REGSSTTR LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS D GK +
Sbjct: 8 VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
LK EI+WS +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW LE YEGTSKV
Sbjct: 68 LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127
Query: 160 KMSKLQ 166
K+SKLQ
Sbjct: 128 KISKLQ 133
BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match:
A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)
HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
VD REGSSTTR LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS D GK +
Sbjct: 8 VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
LK EI+WS +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW LE YEGTSKV
Sbjct: 68 LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127
Query: 160 KMSKLQ 166
K+SKLQ
Sbjct: 128 KISKLQ 133
BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match:
A0A5A7VGN0 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00320 PE=4 SV=1)
HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
+DG REG+STTR LDG NY YWK+RM+AFL S+D R+WKA+++GWEHP+ DE GK +
Sbjct: 1 MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 60
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
K E+ W S ED A++GNSRALN + N VD N+FKLINT AK AWE LEV YEGTS +
Sbjct: 61 RKSELKWMSEEDDATVGNSRALNTLFNVVDQNIFKLINTYKFAKAAWEILEVAYEGTSNI 120
Query: 160 KMSKLQ 166
KMS++Q
Sbjct: 121 KMSRMQ 126
BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match:
Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)
HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0
Query: 44 REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
+EG R LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK + LK
Sbjct: 5 KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64
Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
PE W+ ED +LGNS+ALNA+ NGVD N+F+LINTC AK AWE L++T+EGTSKVKM
Sbjct: 65 PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124
Query: 164 SKLQ 166
S+LQ
Sbjct: 125 SRLQ 128
BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match:
Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)
HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0
Query: 44 REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
+EG R LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK + LK
Sbjct: 5 KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64
Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
PE W+ ED +LGNS+ALNA+ NGVD N+F+LINTC AK AWE L++T+EGTSKVK+
Sbjct: 65 PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124
Query: 164 SKLQ 166
S+LQ
Sbjct: 125 SRLQ 128
BLAST of PI0016291.1 vs. NCBI nr
Match:
XP_008464095.1 (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])
HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
VD REGSSTTR LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS D GK +
Sbjct: 8 VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
LK EI+WS +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW LE YEGTSKV
Sbjct: 68 LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127
Query: 160 KMSKLQ 166
K+SKLQ
Sbjct: 128 KISKLQ 133
BLAST of PI0016291.1 vs. NCBI nr
Match:
KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
VD REGSSTTR LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS D GK +
Sbjct: 8 VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
LK EI+WS +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW LE YEGTSKV
Sbjct: 68 LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127
Query: 160 KMSKLQ 166
K+SKLQ
Sbjct: 128 KISKLQ 133
BLAST of PI0016291.1 vs. NCBI nr
Match:
KAA0065486.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK08726.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 0
Query: 40 VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
+DG REG+STTR LDG NY YWK+RM+AFL S+D R+WKA+++GWEHP+ DE GK +
Sbjct: 1 MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 60
Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
K E+ W S ED A++GNSRALN + N VD N+FKLINT AK AWE LEV YEGTS +
Sbjct: 61 RKSELKWMSEEDDATVGNSRALNTLFNVVDQNIFKLINTYKFAKAAWEILEVAYEGTSNI 120
Query: 160 KMSKLQ 166
KMS++Q
Sbjct: 121 KMSRMQ 126
BLAST of PI0016291.1 vs. NCBI nr
Match:
AAO73527.1 (gag-pol polyprotein [Glycine max])
HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0
Query: 44 REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
+EG R LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK + LK
Sbjct: 5 KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64
Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
PE W+ ED +LGNS+ALNA+ NGVD N+F+LINTC AK AWE L++T+EGTSKVKM
Sbjct: 65 PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124
Query: 164 SKLQ 166
S+LQ
Sbjct: 125 SRLQ 128
BLAST of PI0016291.1 vs. NCBI nr
Match:
AAO73521.1 (gag-pol polyprotein [Glycine max])
HSP 1 Score: 165.6 bits (418), Expect = 3.6e-37
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0
Query: 44 REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
+EG R LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK + LK
Sbjct: 5 KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64
Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
PE W+ ED +LGNS+ALNA+ NGVD N+F+LINTC AK AWE L++T+EGTSKVK+
Sbjct: 65 PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124
Query: 164 SKLQ 166
S+LQ
Sbjct: 125 SRLQ 128
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SVY3 | 2.2e-40 | 67.46 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
A0A1S3CKP5 | 2.2e-40 | 67.46 | uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=... | [more] |
A0A5A7VGN0 | 1.6e-38 | 61.90 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
Q84VH8 | 6.0e-38 | 63.71 | Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1 | [more] |
Q84VI4 | 1.7e-37 | 62.90 | Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
XP_008464095.1 | 4.5e-40 | 67.46 | PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo] | [more] |
KAA0035422.1 | 4.5e-40 | 67.46 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase... | [more] |
KAA0065486.1 | 3.2e-38 | 61.90 | gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK08726.1 gag-proteinase... | [more] |
AAO73527.1 | 1.2e-37 | 63.71 | gag-pol polyprotein [Glycine max] | [more] |
AAO73521.1 | 3.6e-37 | 62.90 | gag-pol polyprotein [Glycine max] | [more] |
Match Name | E-value | Identity | Description | |