PI0016291.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0016291.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr09: 12271328 .. 12271947 (-)
Sequence length	501
RNA-Seq Expression	PI0016291.1
Synteny	PI0016291.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACGTTTCTATGTTATGCTTATTTTTAATATGTTCCCTATGATGTGCACGTAATAAATAGCTTAGACATCAACTTGAGATTCTGGGTTGACCTAGTTTATTTCTTTTTTCAATTGGTATTAGAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA

mRNA sequence

ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA

Coding sequence (CDS)

ATGAATGGATTACAGATTTTTCATGGGCTCTTTGAAAAATCAATATACGATCTCTTTGAGCGGGTTGCTGACCCCCCAAATGTAGATGCAGTTGCATCGAACTGGGTTACCAACAGCGTTGATGGTTTTAGAGAAGGAAGTTCAACGACCAGGTCTCTTTTCCTCGATGGATCAAACTATGCCTATTGGAAGGCTCGGATGGTGGCGTTTTTAAAATCAATTGACCACAGAACATGGAAGGCAATGGTGACTGGCTGGGAGCATCCCTCAGTTACTGATGAGAAAGGCAAGACTTCTCTTAAACCAGAGATATCCTGGTCAAGTGCAGAAGATGCAGCCTCTCTAGGAAACTCAAGAGCATTGAATGCAATATTGAATGGTGTTGATTATAATGTGTTCAAGCTGATAAACACATGTGTATCAGCTAAGGTTGCATGGGAAGCCTTGGAAGTTACCTATGAAGGCACGTCTAAAGTAAAGATGTCCAAGCTTCAATTTTGA

Protein sequence

MNGLQIFHGLFEKSIYDLFERVADPPNVDAVASNWVTNSVDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTSLKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKMSKLQF

Homology

[Close]

BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match: A0A5A7SVY3 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold862G00220 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           VD  REGSSTTR   LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS  D  GK +
Sbjct: 8   VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
           LK EI+WS  +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW  LE  YEGTSKV
Sbjct: 68  LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127

Query: 160 KMSKLQ 166
           K+SKLQ
Sbjct: 128 KISKLQ 133

[Close]

BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match: A0A1S3CKP5 (uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.2e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           VD  REGSSTTR   LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS  D  GK +
Sbjct: 8   VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
           LK EI+WS  +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW  LE  YEGTSKV
Sbjct: 68  LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127

Query: 160 KMSKLQ 166
           K+SKLQ
Sbjct: 128 KISKLQ 133

[Close]

BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match: A0A5A7VGN0 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00320 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           +DG REG+STTR   LDG NY YWK+RM+AFL S+D R+WKA+++GWEHP+  DE GK +
Sbjct: 1   MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 60

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
            K E+ W S ED A++GNSRALN + N VD N+FKLINT   AK AWE LEV YEGTS +
Sbjct: 61  RKSELKWMSEEDDATVGNSRALNTLFNVVDQNIFKLINTYKFAKAAWEILEVAYEGTSNI 120

Query: 160 KMSKLQ 166
           KMS++Q
Sbjct: 121 KMSRMQ 126

[Close]

BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match: Q84VH8 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 6.0e-38
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 44  REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
           +EG    R   LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK +  LK
Sbjct: 5   KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
           PE  W+  ED  +LGNS+ALNA+ NGVD N+F+LINTC  AK AWE L++T+EGTSKVKM
Sbjct: 65  PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124

Query: 164 SKLQ 166
           S+LQ
Sbjct: 125 SRLQ 128

[Close]

BLAST of PI0016291.1 vs. ExPASy TrEMBL
Match: Q84VI4 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.7e-37
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 44  REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
           +EG    R   LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK +  LK
Sbjct: 5   KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
           PE  W+  ED  +LGNS+ALNA+ NGVD N+F+LINTC  AK AWE L++T+EGTSKVK+
Sbjct: 65  PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124

Query: 164 SKLQ 166
           S+LQ
Sbjct: 125 SRLQ 128

[Close]

BLAST of PI0016291.1 vs. NCBI nr
Match: XP_008464095.1 (PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           VD  REGSSTTR   LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS  D  GK +
Sbjct: 8   VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
           LK EI+WS  +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW  LE  YEGTSKV
Sbjct: 68  LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127

Query: 160 KMSKLQ 166
           K+SKLQ
Sbjct: 128 KISKLQ 133

[Close]

BLAST of PI0016291.1 vs. NCBI nr
Match: KAA0035422.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 4.5e-40
Identity = 85/126 (67.46%), Postives = 98/126 (77.78%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           VD  REGSSTTR   LDG+NYAYWKAR++AF+KSID + WKAM+ G EHPS  D  GK +
Sbjct: 8   VDSLREGSSTTRPHVLDGANYAYWKARIIAFIKSIDSKCWKAMIAGLEHPSPKDVAGKET 67

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
           LK EI+WS  +D A+ GNSRALNAI NGVD N+FK INTC+ AK AW  LE  YEGTSKV
Sbjct: 68  LKQEITWSKDKDEAAFGNSRALNAIFNGVDQNIFKWINTCLFAKEAWNILETAYEGTSKV 127

Query: 160 KMSKLQ 166
           K+SKLQ
Sbjct: 128 KISKLQ 133

[Close]

BLAST of PI0016291.1 vs. NCBI nr
Match: KAA0065486.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK08726.1 gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 3.2e-38
Identity = 78/126 (61.90%), Postives = 97/126 (76.98%), Query Frame = 0


Query: 40  VDGFREGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS 99
           +DG REG+STTR   LDG NY YWK+RM+AFL S+D R+WKA+++GWEHP+  DE GK +
Sbjct: 1   MDGIREGNSTTRPPLLDGGNYGYWKSRMIAFLMSLDMRSWKAIISGWEHPTKKDEFGKVT 60

Query: 100 LKPEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKV 159
            K E+ W S ED A++GNSRALN + N VD N+FKLINT   AK AWE LEV YEGTS +
Sbjct: 61  RKSELKWMSEEDDATVGNSRALNTLFNVVDQNIFKLINTYKFAKAAWEILEVAYEGTSNI 120

Query: 160 KMSKLQ 166
           KMS++Q
Sbjct: 121 KMSRMQ 126

[Close]

BLAST of PI0016291.1 vs. NCBI nr
Match: AAO73527.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-37
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 44  REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
           +EG    R   LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK +  LK
Sbjct: 5   KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
           PE  W+  ED  +LGNS+ALNA+ NGVD N+F+LINTC  AK AWE L++T+EGTSKVKM
Sbjct: 65  PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKM 124

Query: 164 SKLQ 166
           S+LQ
Sbjct: 125 SRLQ 128

[Close]

BLAST of PI0016291.1 vs. NCBI nr
Match: AAO73521.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 165.6 bits (418), Expect = 3.6e-37
Identity = 78/124 (62.90%), Postives = 96/124 (77.42%), Query Frame = 0


Query: 44  REGSSTTRSLFLDGSNYAYWKARMVAFLKSIDHRTWKAMVTGWEHPSVTDEKGKTS--LK 103
           +EG    R   LDGSNY YWKARMVAFLKS+D RTWKA++ GWEHP + D +GK +  LK
Sbjct: 5   KEGGPVNRPPILDGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELK 64

Query: 104 PEISWSSAEDAASLGNSRALNAILNGVDYNVFKLINTCVSAKVAWEALEVTYEGTSKVKM 163
           PE  W+  ED  +LGNS+ALNA+ NGVD N+F+LINTC  AK AWE L++T+EGTSKVK+
Sbjct: 65  PEEDWTKEEDELALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKI 124

Query: 164 SKLQ 166
           S+LQ
Sbjct: 125 SRLQ 128

The following BLAST results are available for this feature:

BLAST of PI0016291.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0016291.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVY3	2.2e-40	67.46	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CKP5	2.2e-40	67.46	uncharacterized protein LOC103502061 OS=Cucumis melo OX=3656 GN=LOC103502061 PE=...	[more]
A0A5A7VGN0	1.6e-38	61.90	Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
Q84VH8	6.0e-38	63.71	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI4	1.7e-37	62.90	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of PI0016291.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464095.1	4.5e-40	67.46	PREDICTED: uncharacterized protein LOC103502061 [Cucumis melo]	[more]
KAA0035422.1	4.5e-40	67.46	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK25729.1 gag-proteinase...	[more]
KAA0065486.1	3.2e-38	61.90	gag-proteinase polyprotein [Cucumis melo var. makuwa] >TYK08726.1 gag-proteinase...	[more]
AAO73527.1	1.2e-37	63.71	gag-pol polyprotein [Glycine max]	[more]
AAO73521.1	3.6e-37	62.90	gag-pol polyprotein [Glycine max]	[more]

BLAST of PI0016291.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 43..165
None	No IPR available	PANTHER	PTHR34676:SF8	MYOSIN-11-LIKE	coord: 43..165

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0016291	PI0016291	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016291.1-exon	PI0016291.1-exon-chr09:12271328..12271714	exon
PI0016291.1-exon	PI0016291.1-exon-chr09:12271834..12271947	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0016291.1-cds	PI0016291.1-cds-chr09:12271328..12271714	CDS
PI0016291.1-cds	PI0016291.1-cds-chr09:12271834..12271947	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0016291.1	PI0016291.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0005488	binding
molecular_function	GO:0016787	hydrolase activity