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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGGTGAGTTTCTTCAAAAATCTCGCCCTTATTTACAAAAAAAAATTGTTATTATGAAACAAATATTGATAAAATTGAACATTGAAGGACTAAATTCAAAATTGTTTAAAAACAAACTATTTGTTGATTTATTTTAAATGCTTTAATTTCCAAACGCAGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA mRNA sequence GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA Coding sequence (CDS) ATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAG Protein sequence MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPICVRNGRYSNCLTPRPPRERCSIYIRNCPP
Homology
BLAST of PI0006789.1 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18 Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
MSSGK GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T P T R+KPI
Sbjct: 1 MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60
Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
C +G YS C+ +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84
BLAST of PI0006789.1 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus]) HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18 Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0
Query: 1 MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
MSSGK GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T P T R+KPI
Sbjct: 1 MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60
Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
C +G YS C+ +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84
BLAST of PI0006789.1 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07 Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0
Query: 1 MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSI-SYHTPLIGPGTGDRDKPIC 60
MS GKG LLAF FF LF SSE+ AARKL V NN + T + P T D+P C
Sbjct: 1 MSGGKGSVLLAFLLFFFLF-SSELAAARKLMVAGNNAAVMHEGRTTFVTPRTQYSDRPPC 60
Query: 61 VRNGRYSNCLTPRPPRERCSIYIRNCPP 88
R Y +C + +PP C Y +NCPP
Sbjct: 61 YRTSPYEDCPSFQPP--VCDPYTQNCPP 85
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| O24512 | 3.6e-18 | 61.36 | Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_004144528.1 | 7.4e-18 | 61.36 | uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu... | [more] |
| KAG6589129.1 | 1.2e-07 | 46.59 | hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0006789 | PI0006789 | gene |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006789.1-five_prime_utr | PI0006789.1-five_prime_utr-chr01:3751150..3751340 | five_prime_UTR |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006789.1-exon | PI0006789.1-exon-chr01:3751150..3751449 | exon |
| PI0006789.1-exon | PI0006789.1-exon-chr01:3751606..3752005 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006789.1-cds | PI0006789.1-cds-chr01:3751341..3751449 | CDS |
| PI0006789.1-cds | PI0006789.1-cds-chr01:3751606..3751760 | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006789.1-three_prime_utr | PI0006789.1-three_prime_utr-chr01:3751761..3752005 | three_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0006789.1 | PI0006789.1-protein | polypeptide |
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