PI0006789 (gene) Melon (PI 482460) v1

Overview


Name	PI0006789
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pathogen-induced protein CuPi1
Location	chr01: 3751150 .. 3752005 (+)
RNA-Seq Expression	PI0006789
Synteny	PI0006789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGGTGAGTTTCTTCAAAAATCTCGCCCTTATTTACAAAAAAAAATTGTTATTATGAAACAAATATTGATAAAATTGAACATTGAAGGACTAAATTCAAAATTGTTTAAAAACAAACTATTTGTTGATTTATTTTAAATGCTTTAATTTCCAAACGCAGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA

mRNA sequence

GGTGAATTTTAAAAGTATTTACGCAAGAGGGTTATTATAATCTTACATAGTCATTACCCAAATAACCCATAATTAAATTCACCTTCTTTTTTCTATCTCTTTTGGCTATAAAAGAAAATGGAAATGATTCTCAAACTTCATCTCCAAAACAACTTCAATTTCCTCTTCTCAAAAGCGAGAAAGAAATTCAAATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAGACTGTGTACTGTCACCTATTTCTCTAAAAATGAATGAATCATTCCAAAATCATATGGATTTAAATCTTGTTTTAAAATGTTTGTGTATTAATTTATCCTTTTGAAAAAAGATGTGTGTGTATAATTTATAAATAGTAGTTTATATGATATGTCACTTTGGAGTTTAGTGTTTTATTGTATGATCTGTATGTATTTAGAATCAATATGGAGTTTCTGAATATATATATTACCAAACGTTTGGACTA

Coding sequence (CDS)

ATGAGTAGTGGAAAGGGTTATTCATTGTTGGCTTTTTTCTTCTTCTTCATTCTCTTCATCTCCTCCGAGGTGACTGCAGCAAGGAAGCTGAAGGTGGTCGAAAACAATGAACAGAGCATTAGTTACCATACCCCTCTCATTGGCCCGGGAACAGGAGACCGCGACAAACCCATCTGCGTTCGTAACGGTCGGTATAGCAATTGCCTCACCCCTAGACCACCGCGGGAAAGGTGCAGTATCTATATTAGAAATTGCCCGCCGTAG

Protein sequence

MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPICVRNGRYSNCLTPRPPRERCSIYIRNCPP

Homology

[Close]

BLAST of PI0006789 vs. ExPASy TrEMBL
Match: O24512 (Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.6e-18
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
          MSSGK  GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T    P T  R+KPI
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60

Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
          C  +G YS C+   +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84

[Close]

BLAST of PI0006789 vs. NCBI nr
Match: XP_004144528.1 (uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-induced protein CuPi1 [Cucumis sativus] >KGN43457.1 hypothetical protein Csa_020505 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 7.4e-18
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 0


Query: 1  MSSGK--GYSLLAFFFFFILFISSEVTAARKLKVVENNEQSISYHTPLIGPGTGDRDKPI 60
          MSSGK  GYSLLAFFFFF+LFISSEVTAARKLK+ +NNE+ I Y T    P T  R+KPI
Sbjct: 1  MSSGKGRGYSLLAFFFFFVLFISSEVTAARKLKMHQNNEKGIVYLT----PRTAIRNKPI 60

Query: 61 CVRNGRYSNCL-TPRPPRERCSIYIRNC 86
          C  +G YS C+   +PP+E+C+ Y+R C
Sbjct: 61 CDGSGPYSRCIPRSKPPKEKCNPYVRGC 84

[Close]

BLAST of PI0006789 vs. NCBI nr
Match: KAG6589129.1 (hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-07
Identity = 41/88 (46.59%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 1  MSSGKGYSLLAFFFFFILFISSEVTAARKLKVVENNEQSI-SYHTPLIGPGTGDRDKPIC 60
          MS GKG  LLAF  FF LF SSE+ AARKL V  NN   +    T  + P T   D+P C
Sbjct: 1  MSGGKGSVLLAFLLFFFLF-SSELAAARKLMVAGNNAAVMHEGRTTFVTPRTQYSDRPPC 60

Query: 61 VRNGRYSNCLTPRPPRERCSIYIRNCPP 88
           R   Y +C + +PP   C  Y +NCPP
Sbjct: 61 YRTSPYEDCPSFQPP--VCDPYTQNCPP 85

The following BLAST results are available for this feature:

BLAST of PI0006789 vs.


Match Name	E-value	Identity	Description

BLAST of PI0006789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
O24512	3.6e-18	61.36	Pathogen-induced protein CuPi1 OS=Cucumis sativus OX=3659 GN=Csa_7G037610 PE=2 S...	[more]

BLAST of PI0006789 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144528.1	7.4e-18	61.36	uncharacterized protein LOC101208804 [Cucumis sativus] >AAB71340.1 pathogen-indu...	[more]
KAG6589129.1	1.2e-07	46.59	hypothetical protein SDJN03_17694, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of PI0006789 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0006789.1	PI0006789.1	mRNA