Moc09g00750.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g00750.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr9: 731532 .. 732984 (+)
Sequence length	333
RNA-Seq Expression	Moc09g00750.1
Synteny	Moc09g00750.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCAGATGCCCAAGGTGTTGTTATATATGGTAGACAGATCTTGGACCAAACCCTCGTAGCTAATGAGATCATTGAGGATTATAAAAGTCATAAGTGGGAGAATGTTATCTTTAACATTGATTTTGAGAAGCCTCAGGGACACCCCAATTGGCAAGGGCTTGGGTCTCTTGGTCATACCGACTTAGAGGTCTCAAGTTCAAACCTTCTGTTGAGCTTAATACCAAAAATCCATGTCTTTTAGGTCCGAACCTTGGAGCAAGCGTGGGTGCCCCTAGGTATAGGGGAAAAAGCTCCGACCCCAATTATCAAACAAAACAAAAAAATAAAACATTTATTTTGAGAAGGCTTATGGTCATGTGGATTGAGATTTCCCGGACATAGTCCTCCAAAAGAAGGGGGTTGAGTATAAATGGAGATCGTGGATTTGGAGTGGCATTATGACAGTTAGTATTCTATCTTGGTTGATGGAAAGCTGAGAGGCAGTATCCTTGCTTCGAGAGGTTTGACATGACCCCTCTGCCCTTTCCTTTTCCTGCTGGTAGTAGACGACATATGTAGAGTGGTCTCAAGAGGAGTGGAGGGCAACGTTCTAGAAGGTTTTCTGATGGTGAAGGATAGGTTAGTTCTTCTCTGCCTCCAATTCGTTGATGACATGATTTTCTTCTGTTGTAGGAATGAGTCTTTTGTTAATCTCAACCGAATTCTGGCCTTTTTAGTTGACTTCCAGTCTGAAGATTAACAGGAGTGTTCCCCCCTAGGTATCAATTGTGACCGGTCCAAGGTGGGCACCTGGGCTTCTTTGGTTGGGTGCGAGGTAGGTTAGTTTCTCTCTTCTTACTTAGGCCTACCTCTCGGTCACAATCACATAAGCTCATCATTTTGGGACCTTGCGGTCGAACAAGTGCAAAAACATCTTTTCTCATTGAAAAGAGTTTTTCTCCGAGGGGGTAGACTTACCAGTCTGTGATGCAATTCCACTTTATTGGGATTCTTTATTCTTCTTCTTCTTCTTCTCTTTCTGCAATTAGTTCTTCTCTGCAACTGCAACTATTTGTTTCCTGAGGTGGTTCCCTCTTCCTCTTTTCACCATTCTTCTCATATATAGGCCAAAAAGTAGTCCCCAATTCGGATTTCGAGTTGGACAAAAACCAAAAATAAAAATAAAAGAAAACAAGATTTCCCTCAATCTGTATCTCATAAAAGAACTGCACAAAAATCTGATTCCACCCCTGTAAAATCTGGGTGTCCTGCAAAACTTGAGTCTAGCCTCAAATGAAGATACAAATCATGTTAATTTGATTAGTTTTTCTTTTTCCCTTCTTGATTCTTTCTTTTACGTTCTTCTCAACCAGTTTCCTCTTTCAAATTGGGAAAGATAGTTTGTACTTTGTTGACATCTTTGTGTTATGTTTTTCAGGTTGGGGCCAAGACTCGTATATGGTAGTTGA

mRNA sequence

ATGATCTCAGATGCCCAAGGTGTTGTTATATATGGTAGACAGATCTTGGACCAAACCCTCGTAGCTAATGAGATCATTGAGGATTATAAAAGTCATAAGTGGGAGAATGTTATCTTTAACATTGATTTTGAGAAGCCTCAGGGACACCCCAATTGGCAAGGGCTTGGGTCTCTTGGTCATACCGACTTAGAGGTCCGAACCTTGGAGCAAGCGTGGGTGCCCCTAGTAGACGACATATGTAGAGTGGTCTCAAGAGGAGTGGAGGGCAACGTTCTAGAAGGTTTTCTGATGGTGAAGGATAGGTTGGGGCCAAGACTCGTATATGGTAGTTGA

Coding sequence (CDS)

ATGATCTCAGATGCCCAAGGTGTTGTTATATATGGTAGACAGATCTTGGACCAAACCCTCGTAGCTAATGAGATCATTGAGGATTATAAAAGTCATAAGTGGGAGAATGTTATCTTTAACATTGATTTTGAGAAGCCTCAGGGACACCCCAATTGGCAAGGGCTTGGGTCTCTTGGTCATACCGACTTAGAGGTCCGAACCTTGGAGCAAGCGTGGGTGCCCCTAGTAGACGACATATGTAGAGTGGTCTCAAGAGGAGTGGAGGGCAACGTTCTAGAAGGTTTTCTGATGGTGAAGGATAGGTTGGGGCCAAGACTCGTATATGGTAGTTGA

Protein sequence

MISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHTDLEVRTLEQAWVPLVDDICRVVSRGVEGNVLEGFLMVKDRLGPRLVYGS

Homology

[Close]

BLAST of Moc09g00750.1 vs. NCBI nr
Match: RVW14784.1 (hypothetical protein CK203_091029 [Vitis vinifera])

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ +  + E V+F IDFEK   H +W  L  +   
Sbjct: 564 IHSTQGAFVQGRQILDAVLIANEIVDEKRRSREEGVVFKIDFEKAYDHVSWDFLDHV--- 623

Query: 62  DLEVRTLEQAW----------------VPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
            LE++     W                V + D + R++ R  E NVLEGF + ++R
Sbjct: 624 -LEMKGFSPRWRKWMRGCLSSVSFAVLVKVADVLSRMLLRAEERNVLEGFRVGRNR 675

[Close]

BLAST of Moc09g00750.1 vs. NCBI nr
Match: RVW32868.1 (DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-08
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2    ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
            I   QG  + GRQILD  L+ANEI+++ +    E V+F IDFE    H +W   G L H 
Sbjct: 915  IHSTQGAFVQGRQILDVVLIANEIVDEKRRSGEEGVVFKIDFENAYDHVSW---GFLDHV 974

Query: 62   DLEVRTLEQAW-------------VPLVDDI-CRVVSRGVEGNVLEGFLMVKDR 102
             LE++     W               LV+DI  R++ R  E NVLEGF + ++R
Sbjct: 975  -LEMKGFSPRWRQWMRGCLSSVSFAVLVNDILSRMLLRAEERNVLEGFRVGRNR 1024

[Close]

BLAST of Moc09g00750.1 vs. NCBI nr
Match: RVW90164.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-08
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ K    E V+F IDFEK   H  W  L  +   
Sbjct: 532 IHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEGVVFKIDFEKAYNHVKWDFLDHV--L 591

Query: 62  DLEVRTLEQA-------WVPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
           + + R L Q        +  + D + R++ +  E N+LEGF + ++R
Sbjct: 592 EKKARGLRQGDPLSPFLFTIVADVLSRMLLKAEERNLLEGFRVGRNR 636

[Close]

BLAST of Moc09g00750.1 vs. NCBI nr
Match: RVW46826.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 67.4 bits (163), Expect = 8.8e-08
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ +    E V+F IDFEK   H +W  L  +   
Sbjct: 133 IHSTQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVFKIDFEKAYDHMSWDFLDHV--- 192

Query: 62  DLEVRTLEQAW----------------VPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
            LE++     W                V + D + R++ +  E NVLEGF + ++R
Sbjct: 193 -LEMKGFSPRWRKWMRGCLSSVSFPVLVNVADVLSRMLLKAEEKNVLEGFRVGRNR 244

[Close]

BLAST of Moc09g00750.1 vs. NCBI nr
Match: RVW91397.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 39/120 (32.50%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ +    E V+F IDFEK   H +W  L  +   
Sbjct: 37  IHSTQGAFVQGRQILDSVLIANEIVDEKRGSGEEGVVFKIDFEKAYDHVSWDFLDHV--- 96

Query: 62  DLEVRTLEQAW--------------------VPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
            LE++     W                    V + D + +++ R  E NVLEGF + ++R
Sbjct: 97  -LEMKGFSPRWRKWMRGCLSSVSFAVLVNGNVKVADVLSKMLLRAEERNVLEGFKVGRNR 152

[Close]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL
Match: A0A438BUX9 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_091029 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.0e-09
Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ +  + E V+F IDFEK   H +W  L  +   
Sbjct: 564 IHSTQGAFVQGRQILDAVLIANEIVDEKRRSREEGVVFKIDFEKAYDHVSWDFLDHV--- 623

Query: 62  DLEVRTLEQAW----------------VPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
            LE++     W                V + D + R++ R  E NVLEGF + ++R
Sbjct: 624 -LEMKGFSPRWRKWMRGCLSSVSFAVLVKVADVLSRMLLRAEERNVLEGFRVGRNR 675

[Close]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL
Match: A0A438DBQ9 (DExH-box ATP-dependent RNA helicase DExH14 OS=Vitis vinifera OX=29760 GN=BRR2C_5 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 43/114 (37.72%), Postives = 59/114 (51.75%), Query Frame = 0


Query: 2    ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
            I   QG  + GRQILD  L+ANEI+++ +    E V+F IDFE    H +W   G L H 
Sbjct: 915  IHSTQGAFVQGRQILDVVLIANEIVDEKRRSGEEGVVFKIDFENAYDHVSW---GFLDHV 974

Query: 62   DLEVRTLEQAW-------------VPLVDDI-CRVVSRGVEGNVLEGFLMVKDR 102
             LE++     W               LV+DI  R++ R  E NVLEGF + ++R
Sbjct: 975  -LEMKGFSPRWRQWMRGCLSSVSFAVLVNDILSRMLLRAEERNVLEGFRVGRNR 1024

[Close]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL
Match: A0A803QGT5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-08
Identity = 42/109 (38.53%), Postives = 54/109 (49.54%), Query Frame = 0


Query: 2    ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLG----- 61
            ISD Q   + GRQILD  L+ANE +EDY+S     ++F IDFEK      W  L      
Sbjct: 967  ISDIQSAFVEGRQILDSVLIANETVEDYRSRGKSGMVFKIDFEKAYDRVEWDFLDLTKRK 1026

Query: 62   --SLGHTDLEVRTLEQAWVPLVDDIC-RVVSRGVEGNVLEGFLMVKDRL 103
              S+  T  E R        LV DI  R+V + V    L GF + KD++
Sbjct: 1027 IQSISRT--ETRRSSPFLFTLVADILGRMVDKAVNSGSLSGFSVGKDKI 1073

[Close]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL
Match: A0A438I0B4 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 38/107 (35.51%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ K    E V+F IDFEK   H  W  L  +   
Sbjct: 532 IHSTQGAFVQGRQILDAVLIANEIVDEKKRSGEEGVVFKIDFEKAYNHVKWDFLDHV--L 591

Query: 62  DLEVRTLEQA-------WVPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
           + + R L Q        +  + D + R++ +  E N+LEGF + ++R
Sbjct: 592 EKKARGLRQGDPLSPFLFTIVADVLSRMLLKAEERNLLEGFRVGRNR 636

[Close]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL
Match: A0A438EGI5 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_197 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 0


Query: 2   ISDAQGVVIYGRQILDQTLVANEIIEDYKSHKWENVIFNIDFEKPQGHPNWQGLGSLGHT 61
           I   QG  + GRQILD  L+ANEI+++ +    E V+F IDFEK   H +W  L  +   
Sbjct: 133 IHSTQGAFVQGRQILDAVLIANEIVDEKRRSGEEGVVFKIDFEKAYDHMSWDFLDHV--- 192

Query: 62  DLEVRTLEQAW----------------VPLVDDICRVVSRGVEGNVLEGFLMVKDR 102
            LE++     W                V + D + R++ +  E NVLEGF + ++R
Sbjct: 193 -LEMKGFSPRWRKWMRGCLSSVSFPVLVNVADVLSRMLLKAEEKNVLEGFRVGRNR 244

The following BLAST results are available for this feature:

BLAST of Moc09g00750.1 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW14784.1	1.0e-08	34.48	hypothetical protein CK203_091029 [Vitis vinifera]	[more]
RVW32868.1	6.7e-08	37.72	DExH-box ATP-dependent RNA helicase DExH14 [Vitis vinifera]	[more]
RVW90164.1	8.8e-08	35.51	putative mitochondrial protein [Vitis vinifera]	[more]
RVW46826.1	8.8e-08	33.62	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW91397.1	1.2e-07	32.50	putative ribonuclease H protein [Vitis vinifera]	[more]

BLAST of Moc09g00750.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438BUX9	5.0e-09	34.48	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=CK...	[more]
A0A438DBQ9	3.3e-08	37.72	DExH-box ATP-dependent RNA helicase DExH14 OS=Vitis vinifera OX=29760 GN=BRR2C_5...	[more]
A0A803QGT5	3.3e-08	38.53	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
A0A438I0B4	4.3e-08	35.51	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_100 PE=4 ...	[more]
A0A438EGI5	4.3e-08	33.62	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]

BLAST of Moc09g00750.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc09g00750	Moc09g00750	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc09g00750.1.exon1	Moc09g00750.1.exon1	exon
Moc09g00750.1.exon2	Moc09g00750.1.exon2	exon
Moc09g00750.1.exon3	Moc09g00750.1.exon3	exon
Moc09g00750.1.exon4	Moc09g00750.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc09g00750.1	cds.Moc09g00750.1	CDS
cds.Moc09g00750.1	cds.Moc09g00750.1_2	CDS
cds.Moc09g00750.1	cds.Moc09g00750.1_3	CDS
cds.Moc09g00750.1	cds.Moc09g00750.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc09g00750.1	Moc09g00750.1-protein	polypeptide