MS015178.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS015178.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRibosomal protein L2
Locationscaffold2: 1652438 .. 1652578 (-)
Sequence length141
RNA-Seq ExpressionMS015178.1
SyntenyMS015178.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGACTGCATCACTTTCCTTTGGTAACTCTTTTGGTTTCCCAAGGATAGAGGTAGTTGGGGCAAAGCCCACTTTCTTCGCTCTGCGAATGAGAACTAAACTCAGAGGAAAAAACACATTCTCTCTTTGCGAGGTCCAAAAA

mRNA sequence

GAGACTGCATCACTTTCCTTTGGTAACTCTTTTGGTTTCCCAAGGATAGAGGTAGTTGGGGCAAAGCCCACTTTCTTCGCTCTGCGAATGAGAACTAAACTCAGAGGAAAAAACACATTCTCTCTTTGCGAGGTCCAAAAA

Coding sequence (CDS)

GAGACTGCATCACTTTCCTTTGGTAACTCTTTTGGTTTCCCAAGGATAGAGGTAGTTGGGGCAAAGCCCACTTTCTTCGCTCTGCGAATGAGAACTAAACTCAGAGGAAAAAACACATTCTCTCTTTGCGAGGTCCAAAAA

Protein sequence

ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK
Homology
[Close]
BLAST of MS015178.1 vs. NCBI nr
Match: YP_009913619.1 (ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa acutangula])

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPRI V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 180 ETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRK 226

[Close]
BLAST of MS015178.1 vs. NCBI nr
Match: YP_003587229.1 (ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citrullus lanatus])

HSP 1 Score: 83.2 bits (204), Expect = 6.6e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPR+ V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 178 ETASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRK 224

[Close]
BLAST of MS015178.1 vs. NCBI nr
Match: WP_131747056.1 (hypothetical protein [Candidatus Frankia meridionalis])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ET+SLSFG+SFGFPRI V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 175 ETSSLSFGSSFGFPRIAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRK 221

[Close]
BLAST of MS015178.1 vs. NCBI nr
Match: DAD25556.1 (TPA_asm: hypothetical protein HUJ06_027020 [Nelumbo nucifera])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPRI V GAKP FFA RMR KL+GKNTFSLCEV+K
Sbjct: 184 ETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLKGKNTFSLCEVRK 230

[Close]
BLAST of MS015178.1 vs. NCBI nr
Match: QXX99528.1 (ribosomal protein L2 [Macadamia integrifolia] >QXX99570.1 ribosomal protein L2 [Macadamia ternifolia] >QXX99612.1 ribosomal protein L2 [Macadamia tetraphylla])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPRI V GAKP FFA RMR K+RGKNTFSLCEV+K
Sbjct: 178 ETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRK 224

[Close]
BLAST of MS015178.1 vs. ExPASy Swiss-Prot
Match: P93311 (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.1e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASL+F +SFGFPRI V GAKP FFA RMR K+RGK+TFSLCEVQK
Sbjct: 179 ETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQK 225

[Close]
BLAST of MS015178.1 vs. ExPASy Swiss-Prot
Match: P0C8K6 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-13
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+S GFPRI V GAKP FFA RMR K  GK TFSLCE++K
Sbjct: 124 ETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRK 170

[Close]
BLAST of MS015178.1 vs. ExPASy Swiss-Prot
Match: Q2F969 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=RPL2 PE=3 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-13
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+S GFPRI V GAKP FFA RMR K  GK TFSLCE++K
Sbjct: 124 ETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRK 170

[Close]
BLAST of MS015178.1 vs. ExPASy Swiss-Prot
Match: P92812 (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPL2 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 9.0e-13
Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+S GFPRI V GAKP FFA RMR K  GK TFSLCE++K
Sbjct: 124 ETASLSFGSSLGFPRIAVAGAKPAFFAERMREKKIGKKTFSLCEIRK 170

[Close]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match: A0A7D5XZ32 (Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-13
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPRI V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 180 ETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRK 226

[Close]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match: D5I399 (Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPR+ V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 178 ETASLSFGSSFGFPRVAVAGAKPAFFAPRMRDKLRGKNTFSLCEVRK 224

[Close]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match: B6VJV4 (Ribosomal protein L2 OS=Vitis vinifera OX=29760 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ET+SLSFG+SFGFPRI V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 181 ETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRK 227

[Close]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match: Q5MF17 (Ribosomal protein L2 (Fragment) OS=Platanus occidentalis OX=4403 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASLSFG+SFGFPRI V GAKP FFA RMR K+RGKNTFSLCEV+K
Sbjct: 150 ETASLSFGSSFGFPRIAVAGAKPAFFAPRMREKVRGKNTFSLCEVRK 196

[Close]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match: A5BK62 (Ribosomal_L2 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_029794 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-13
Identity = 39/47 (82.98%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ET+SLSFG+SFGFPRI V GAKP FFA RMR KLRGKNTFSLCEV+K
Sbjct: 181 ETSSLSFGSSFGFPRIAVAGAKPAFFAPRMREKLRGKNTFSLCEVRK 227

[Close]
BLAST of MS015178.1 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-15
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASL+F +SFGFPRI V GAKP FFA RMR K+RGK+TFSLCEVQK
Sbjct: 179 ETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQK 225

[Close]
BLAST of MS015178.1 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.5e-15
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 1   ETASLSFGNSFGFPRIEVVGAKPTFFALRMRTKLRGKNTFSLCEVQK 48
           ETASL+F +SFGFPRI V GAKP FFA RMR K+RGK+TFSLCEVQK
Sbjct: 179 ETASLAFASSFGFPRIAVAGAKPAFFAPRMRQKVRGKSTFSLCEVQK 225

The following BLAST results are available for this feature:
BLAST of MS015178.1 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_009913619.15.1e-1385.11ribosomal protein L2 [Luffa acutangula] >QLJ93019.1 ribosomal protein L2 [Luffa ... [more]
YP_003587229.16.6e-1382.98ribosomal protein L2 [Citrullus lanatus] >ACV96645.1 ribosomal protein L2 [Citru... [more]
WP_131747056.11.1e-1282.98hypothetical protein [Candidatus Frankia meridionalis][more]
DAD25556.11.1e-1282.98TPA_asm: hypothetical protein HUJ06_027020 [Nelumbo nucifera][more]
QXX99528.11.1e-1282.98ribosomal protein L2 [Macadamia integrifolia] >QXX99570.1 ribosomal protein L2 [... [more]
BLAST of MS015178.1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P933112.1e-1478.7260S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPL2 ... [more]
P0C8K69.0e-1374.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa OX=4530 GN=RPL2 PE=3 SV=... [more]
Q2F9699.0e-1374.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica OX=39946 G... [more]
P928129.0e-1374.4760S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica OX=39947... [more]
BLAST of MS015178.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7D5XZ322.5e-1385.11Ribosomal protein L2 OS=Luffa acutangula OX=56866 GN=rpl2 PE=3 SV=1[more]
D5I3993.2e-1382.98Ribosomal protein L2 OS=Citrullus lanatus OX=3654 GN=rpl2 PE=3 SV=1[more]
B6VJV45.5e-1382.98Ribosomal protein L2 OS=Vitis vinifera OX=29760 GN=rpl2 PE=3 SV=1[more]
Q5MF175.5e-1382.98Ribosomal protein L2 (Fragment) OS=Platanus occidentalis OX=4403 GN=rpl2 PE=3 SV... [more]
A5BK625.5e-1382.98Ribosomal_L2 domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_0297... [more]
BLAST of MS015178.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07715.11.5e-1578.72Nucleic acid-binding, OB-fold-like protein [more]
ATMG00560.11.5e-1578.72Nucleic acid-binding, OB-fold-like protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS015178MS015178gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS015178.1-cdsMS015178.1-cds-scaffold2:1652438..1652578CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS015178.1MS015178.1-proteinpolypeptide